DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SPARC and spock1

DIOPT Version :10

Sequence 1:NP_651509.2 Gene:SPARC / 43230 FlyBaseID:FBgn0026562 Length:304 Species:Drosophila melanogaster
Sequence 2:XP_021336759.2 Gene:spock1 / 110440200 ZFINID:ZDB-GENE-110428-1 Length:454 Species:Danio rerio


Alignment Length:343 Identity:83/343 - (24%)
Similarity:124/343 - (36%) Gaps:85/343 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRSLWLLLGLGLLAVSHVQASTEFSEDLLDEDLDLSDIDE----------NEEEFLRLLEEKNKI 55
            |.||.|.:.|..|.|| |..|::.:.  ||.|..:|.:.:          .::::.|.. ..||.
Zfish     2 MLSLGLFVSLVGLTVS-VTGSSDGNP--LDNDKWMSTVSQYDKSKYWNKFRDDDYFRTW-NPNKA 62

  Fly    56 KDIERENEIATKLAEVQHNLLNPVV------EVDLCETMSCGAGRICQMHD--------EKP--- 103
            :|.|......|:|....|:......      ..|.|..:.|...::|..||        .||   
Zfish    63 QDQENAPNQRTELNHKSHSKTKSRTTDGLDSTKDPCMKVHCPPHKVCVSHDYQTAICTNHKPAQH 127

  Fly   104 ---------------------KCVCIPECPEEVDTRRLVCTNTNETWPSDCSVYQQRCWCDSGE- 146
                                 ||   ..||  |....|||.:...|:.|.|.:..|.  |.||: 
Zfish   128 SVKAKKGNIPHKRWMGAVNHGKC---RPCP--VVHSSLVCGSDGHTYASKCKLEFQA--CSSGKS 185

  Fly   147 --PGCTNPDNAHMHIDYYGACHEPRSCEGEDLKDFPRRMRDWLFNVMRDLAERDELTEHYMQMEL 209
              ..|..|.......:......|...|...||:....|::|| |.|:...|.||          |
Zfish   186 LSAKCEGPCPCLPGQEVIKPHTEKNGCTDADLRSLASRLKDW-FGVLHTDANRD----------L 239

  Fly   210 EAETNNSR--RWSNAAV--------WKWCDLDGDTDRSVSRHELFPIRAPLVSLEHCIAPFLESC 264
            :|.|:.:.  |:..:.:        |.:..||.:.|..:.:.||..|.  |...|.|:.|...||
Zfish   240 KASTSEAAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDQSELSAIY--LDKYELCMRPLFNSC 302

  Fly   265 DSNKDHRITLVEWGACLE 282
            ||.||.:::..||..|.:
Zfish   303 DSFKDGKLSNNEWCYCFQ 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SPARCNP_651509.2 FSL_SPARC 85..168 CDD:238649 24/117 (21%)
EFh_SPARC_like 171..285 CDD:320010 35/122 (29%)
EF-hand motif 219..251 CDD:320010 7/39 (18%)
EF-hand motif 253..285 CDD:320010 12/30 (40%)
spock1XP_021336759.2 None

Return to query results.
Submit another query.