DRSC/TRiP Functional Genomics Resources

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Protein Alignment His2Av and Macroh2a1

DIOPT Version :9

Sequence 1:NP_001262997.1 Gene:His2Av / 43229 FlyBaseID:FBgn0001197 Length:141 Species:Drosophila melanogaster
Sequence 2:XP_006253635.1 Gene:Macroh2a1 / 29384 RGDID:621462 Length:372 Species:Rattus norvegicus


Alignment Length:130 Identity:67/130 - (51%)
Similarity:88/130 - (67%) Gaps:9/130 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 GKAKAKAVSRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 75
            ||.|:...||||:||:.|||||:.|::|.....: |:|..|.||.||:|||||||:|||||||::
  Rat     6 GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAGNAAR 69

  Fly    76 DLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK-------EETVQDPQRK 132
            |.|..|:||||:.||:..||||:.|:| .|||.|||:|:||..|:.||       |..:..|..|
  Rat    70 DNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAK 134

  Fly   133  132
              Rat   135  134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
His2AvNP_001262997.1 PLN00154 6..121 CDD:177756 62/110 (56%)
Macroh2a1XP_006253635.1 H2A 5..117 CDD:238029 62/111 (56%)
H2A 14..119 CDD:197711 61/105 (58%)
Macro_H2A_like 179..364 CDD:239232
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5262
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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