DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment IntS12 and Phf19

DIOPT Version :9

Sequence 1:NP_651507.1 Gene:IntS12 / 43227 FlyBaseID:FBgn0039459 Length:328 Species:Drosophila melanogaster
Sequence 2:NP_082992.1 Gene:Phf19 / 74016 MGIID:1921266 Length:578 Species:Mus musculus


Alignment Length:73 Identity:21/73 - (28%)
Similarity:29/73 - (39%) Gaps:18/73 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 IVNTGDTGDFGDLNCCVCGEMVFTATNRLIECSKCGAMYHQECHKP-------PITKEEAADDQE 174
            |.:.|..|:  :..|.||........|.::.|.|||..|||:||.|       |:.         
Mouse    85 IQHAGVPGE--EPKCDVCMGKTSGPMNEILICGKCGLGYHQQCHIPIAVDANWPLL--------- 138

  Fly   175 QNWQCDTC 182
            .:|.|..|
Mouse   139 THWFCRRC 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IntS12NP_651507.1 PHD_Int12 130..182 CDD:276976 17/58 (29%)
Phf19NP_082992.1 Tudor_2 41..76 CDD:375553
Histone H3K36me3 binding. /evidence=ECO:0000250 72..78
PHD_SF 96..148 CDD:389947 18/60 (30%)
PHD2_PHF19 195..246 CDD:277056
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 348..390
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 486..528
Interaction with SUZ12. /evidence=ECO:0000250|UniProtKB:Q5T6S3 529..578
Mtf2_C 529..576 CDD:372898
Important for PRC2 dimer stability. /evidence=ECO:0000250|UniProtKB:Q5T6S3 529..542
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4323
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.