DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment IntS12 and ints12

DIOPT Version :9

Sequence 1:NP_651507.1 Gene:IntS12 / 43227 FlyBaseID:FBgn0039459 Length:328 Species:Drosophila melanogaster
Sequence 2:NP_001002161.2 Gene:ints12 / 415251 ZFINID:ZDB-GENE-040625-178 Length:479 Species:Danio rerio


Alignment Length:410 Identity:102/410 - (24%)
Similarity:170/410 - (41%) Gaps:104/410 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 AAAAAQEVDPVLKKAIKLLHSSNPTSAAELRLLLDEALKARFGPEKSLTNNM---------TPRM 63
            |...:.|:||:..|.:..|||.:..||.:|:.||||:| || |.:....|::         .|:|
Zfish     2 AGTVSLELDPIFLKGLGYLHSKSKDSAEKLKALLDESL-AR-GSDSIYRNSIKEAEVSKVSLPKM 64

  Fly    64 LEDEANFSGRAATPPQQPINADEIINLTNSPDKE------------PSDSVD----TIADSDDGL 112
            .:.::..|..::.......:.....:::....||            |.:.|:    ...:..|..
Zfish    65 TKQDSKSSSSSSVSSSITTSNSSKSSISEKSKKESEKRTLEKIRVDPGEGVEPPKKPRLEKQDSH 129

  Fly   113 SAVGIVNTGD--TGDFGDLN--------------CCVCGEMVFTATNRLIECSKCGAMYHQECHK 161
            |:.....|.|  ..||.|::              |.||.:|..|:.|:|:||.:|..:|||||||
Zfish   130 SSPIAFQTKDIPIPDFTDIDETNADDFAMEMGLACVVCRQMTVTSGNQLVECQECHNLYHQECHK 194

  Fly   162 PPITKEEAADDQEQNWQCDTCCNKPTSSGRTTSS-----AAAVTPTVFIADEPM---------PL 212
            |.:|.:: .:|....|.|..|..:.....:.|..     |.|:..||.:..:|:         |.
Zfish   195 PQVTDKD-VNDPRLVWYCARCTRQMKRMAQKTQKPPQKPAPALATTVPLLKDPLVKKAELKPKPE 258

  Fly   213 T---------SKAKSSVASSRSSNSSNSSSPFYRPEPSSSTNASSSSSSKHGHKSSSSSSSKSHK 268
            |         ::.|::.||..||:||:|||..  |...:...|.:.::|..|..|:..|:|:|..
Zfish   259 TTGSFQAFKRTEVKATAASGNSSSSSSSSSSL--PPGLTGWAAFTKATSNVGPSSTKLSTSQSGN 321

  Fly   269 EERS-----SKSTAASSLSAI---------GGMEKHNSSGTSSRRSGSST--------------- 304
            .:.|     ||....|:|:.:         ||    :|:|:.:..:||.|               
Zfish   322 SKTSPAASGSKPVGLSALANVKPALATKPSGG----SSAGSGNGNNGSGTVPLKAPPPLTLGKQV 382

  Fly   305 --KSSSKSSSSKHHESGSSS 322
              :|:|..|..|...:||.|
Zfish   383 LSRSASGDSLGKMTVTGSLS 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IntS12NP_651507.1 PHD_Int12 130..182 CDD:276976 22/65 (34%)
ints12NP_001002161.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 57..140 10/82 (12%)
PHD_Int12 163..214 CDD:276976 22/51 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 221..241 4/19 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 274..293 10/20 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 305..479 25/102 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573451
Domainoid 1 1.000 59 1.000 Domainoid score I10717
eggNOG 1 0.900 - - E1_KOG4323
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 93 1.000 Inparanoid score I5069
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1631937at2759
OrthoFinder 1 1.000 - - FOG0006596
OrthoInspector 1 1.000 - - oto38640
orthoMCL 1 0.900 - - OOG6_107743
Panther 1 1.100 - - LDO PTHR13415
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3479
SonicParanoid 1 1.000 - - X5595
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.790

Return to query results.
Submit another query.