DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment IntS12 and Phf19

DIOPT Version :10

Sequence 1:NP_651507.1 Gene:IntS12 / 43227 FlyBaseID:FBgn0039459 Length:328 Species:Drosophila melanogaster
Sequence 2:NP_001100040.1 Gene:Phf19 / 296653 RGDID:1310390 Length:578 Species:Rattus norvegicus


Alignment Length:70 Identity:22/70 - (31%)
Similarity:29/70 - (41%) Gaps:12/70 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 IVNTGDTGDFGDLNCCVCGEMVFTATNRLIECSKCGAMYHQECHKPPITKEEAADDQE----QNW 177
            |.:.|..|:  :..|.||........|.::.|.|||..|||:||.|      .|.|..    .:|
  Rat    85 IQHAGVPGE--EPKCDVCMGKTSGPMNEILICGKCGLGYHQQCHIP------IAVDANWPLLTHW 141

  Fly   178 QCDTC 182
            .|..|
  Rat   142 FCRRC 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IntS12NP_651507.1 PHD_Int12 130..182 CDD:276976 18/55 (33%)
Phf19NP_001100040.1 Tudor_PHF19 37..93 CDD:410522 2/7 (29%)
PHD_SF 96..148 CDD:473978 19/57 (33%)
PHD2_PHF19 195..246 CDD:277056
Mtf2_C 529..576 CDD:464077
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.