DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tl and RLP40

DIOPT Version :9

Sequence 1:NP_001262995.1 Gene:Tl / 43222 FlyBaseID:FBgn0262473 Length:1117 Species:Drosophila melanogaster
Sequence 2:NP_566757.2 Gene:RLP40 / 822091 AraportID:AT3G24982 Length:915 Species:Arabidopsis thaliana


Alignment Length:761 Identity:173/761 - (22%)
Similarity:290/761 - (38%) Gaps:197/761 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LLVIILQLLQWPGSEASF-----GRDACSEMSIDGLCQCAPIMSEYEI-ICPANAENPTFRLTIQ 70
            ||:::|..:. |.|..:|     |..||....|....|   ..:|::. .|  |..:|       
plant    42 LLLLLLSCVS-PSSFFTFNNPVVGLGACGPHQIQAFTQ---FKNEFDTRAC--NHSDP------- 93

  Fly    71 PKDYVQIMCNLTDTTDYQQLPKKLRIGEVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESD 135
               :..:.|:  |:|           |.|..:|:|.|:.....|.:|:..:..:.|   |:...:
plant    94 ---WNGVWCD--DST-----------GAVTMLQLRACLSGTLKPNSSLFQFHHLRS---LLLPHN 139

  Fly   136 NLGMNITRQHLDRLHGLKRFRFTTRR-LTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENL 199
            |...:........|:.|:....::.. |..:|.: .:::..||.|.|..|          ||.. 
plant   140 NFTSSSISSKFGMLNNLEVLSLSSSGFLAQVPFS-FSNLSMLSALVLSNN----------DLTG- 192

  Fly   200 ESIEFGSN--KLRQM------------PRGIFGKMPKLKQLNL-WSNQLHNLTKHDFEGATSVLG 249
             |:.|..|  |||.:            |.....::..:..||| ::|...:...::|.....:..
plant   193 -SLSFARNLRKLRVLDVSYNHFSGILNPNSSLFELHHIIYLNLRYNNFTSSSLPYEFGNLNKLEV 256

  Fly   250 IDIHDNG-IEQLPHDVFAHLTNVTDINLSANLFR-SLPQGLFDHNKHLNEVRLMNNRVPLATLPS 312
            :|:..|. ..|:|..: ::||.:|::.|..|.|. |||  |..:...|:.:.|..|... .|:||
plant   257 LDVSSNSFFGQVPPTI-SNLTQLTELYLPLNHFTGSLP--LVQNLTKLSILHLFGNHFS-GTIPS 317

  Fly   313 RLFANQPELQILRLRAELQSLPGDL----FEHSTQITNISLGDNLLKTLPATLLEHQVNLLSLDL 373
            .|| ..|.|..|.|:.  .:|.|.:    ...|:::.::.||:|..:......:...:||..|||
plant   318 SLF-TMPFLSYLSLKG--NNLNGSIEVPNSSSSSRLESLHLGENHFEGKILEPISKLINLKELDL 379

  Fly   374 SNNRLTHLPDSLFAHTTNLTDLRLEDNLLTGISGDIFSNLGNLVTLVMSRNRLR----TIDSRAF 434
            |           |.:|:...||.|            ||:|.:|:.|.:|.:.:.    |:||  :
plant   380 S-----------FLNTSYPIDLSL------------FSSLKSLLLLDLSGDWISKASLTLDS--Y 419

  Fly   435 VSTNGLRHLHLDHNDIDLQQPLLDIMLQTQINSPFGYMHGLLTLNLRNNSIIFVYNDWKNTMLQL 499
            :.:. |..|.|:|.||            :...:.|..:|.|..:.|.||.|...:.:|..::.:|
plant   420 IPST-LEVLRLEHCDI------------SDFPNVFKTLHNLEYIALSNNRISGKFPEWLWSLPRL 471

  Fly   500 RELDLSYNNISSLGYE-----------DLAFLSQNRLHVNMTHNKIRRIALPEDVHLGEGYNNNL 553
            ..:.::.|.::  |:|           .:..|..|.|...:.|       ||..::.....:|..
plant   472 SSVFITDNLLT--GFEGSSEVLVNSSVQILSLDTNSLEGALPH-------LPLSINYFSAIDNRF 527

  Fly   554 VHVDLNDNPL-VCDCTILWFIQL----VRGVHKPQYSR--QFKLRTDRLVCSQPN-VLEGTPVRQ 610
            .    .|.|| :|:.:.|..:.|    ..|...|..|.  ..|||.:.|..|.|: ..|.||:|.
plant   528 G----GDIPLSICNRSSLDVLDLSYNNFTGPIPPCLSNLLYLKLRKNNLEGSIPDKYYEDTPLRS 588

  Fly   611 IEPQTLICPLDFSDDPRERKCPRGCNCHVRTYDKALVINC---------HSGNLTHVP----RLP 662
                     ||...:....|.||.            :|||         |:|.....|    .||
plant   589 ---------LDVGYNRLTGKLPRS------------LINCSALQFLSVDHNGIKDTFPFSLKALP 632

  Fly   663 NLHKNMQLMELHLENNTL---LRLPSANTPGYESVTSLHLAGNNLT 705
                  :|..|.|.:|..   |..|:....|:..:..|.:|||.||
plant   633 ------KLQVLLLSSNKFYGPLSPPNEGPLGFPELRILEIAGNKLT 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TlNP_001262995.1 LRR_8 174..233 CDD:290566 18/73 (25%)
leucine-rich repeat 176..198 CDD:275380 7/21 (33%)
leucine-rich repeat 199..222 CDD:275380 7/36 (19%)
LRR_RI 216..542 CDD:238064 81/347 (23%)
LRR_8 221..281 CDD:290566 14/61 (23%)
leucine-rich repeat 223..270 CDD:275380 10/48 (21%)
leucine-rich repeat 271..294 CDD:275380 8/23 (35%)
leucine-rich repeat 295..320 CDD:275380 8/24 (33%)
leucine-rich repeat 321..343 CDD:275380 6/25 (24%)
LRR_8 342..402 CDD:290566 14/59 (24%)
leucine-rich repeat 344..367 CDD:275380 3/22 (14%)
leucine-rich repeat 368..391 CDD:275380 7/22 (32%)
LRR_8 390..450 CDD:290566 16/63 (25%)
leucine-rich repeat 392..415 CDD:275380 6/22 (27%)
leucine-rich repeat 416..439 CDD:275380 6/26 (23%)
leucine-rich repeat 440..474 CDD:275380 7/33 (21%)
leucine-rich repeat 475..498 CDD:275380 6/22 (27%)
LRR_8 477..534 CDD:290566 13/67 (19%)
leucine-rich repeat 499..520 CDD:275380 4/31 (13%)
leucine-rich repeat 523..552 CDD:275380 5/28 (18%)
LRRCT 561..619 CDD:214507 18/65 (28%)
LRRNT 631..667 CDD:214470 10/48 (21%)
leucine-rich repeat 664..693 CDD:275380 7/31 (23%)
LRR_8 669..726 CDD:290566 13/40 (33%)
leucine-rich repeat 694..715 CDD:275380 6/12 (50%)
leucine-rich repeat 716..737 CDD:275380
LRRCT 751..800 CDD:214507
TIR 858..996 CDD:214587
RLP40NP_566757.2 LRR_RI 97..>263 CDD:238064 37/194 (19%)
LRR_8 130..190 CDD:290566 12/73 (16%)
leucine-rich repeat 131..155 CDD:275380 4/26 (15%)
leucine-rich repeat 156..179 CDD:275380 3/23 (13%)
leucine-rich repeat 180..202 CDD:275380 10/33 (30%)
LRR_8 201..264 CDD:290566 11/62 (18%)
leucine-rich repeat 203..228 CDD:275380 3/24 (13%)
leucine-rich repeat 229..253 CDD:275380 5/23 (22%)
leucine-rich repeat 254..277 CDD:275380 5/23 (22%)
leucine-rich repeat 278..300 CDD:275380 8/23 (35%)
leucine-rich repeat 301..324 CDD:275380 8/24 (33%)
leucine-rich repeat 325..349 CDD:275380 6/25 (24%)
leucine-rich repeat 350..371 CDD:275380 3/20 (15%)
LRR_8 422..481 CDD:290566 16/71 (23%)
leucine-rich repeat 424..446 CDD:275380 7/33 (21%)
leucine-rich repeat 447..468 CDD:275380 6/20 (30%)
leucine-rich repeat 471..495 CDD:275380 4/25 (16%)
leucine-rich repeat 517..540 CDD:275380 5/26 (19%)
leucine-rich repeat 541..585 CDD:275380 12/43 (28%)
LRR_8 560..620 CDD:290566 20/80 (25%)
leucine-rich repeat 563..583 CDD:275380 6/19 (32%)
leucine-rich repeat 586..609 CDD:275380 9/43 (21%)
leucine-rich repeat 610..633 CDD:275380 5/28 (18%)
leucine-rich repeat 634..660 CDD:275380 7/25 (28%)
leucine-rich repeat 735..758 CDD:275380
leucine-rich repeat 759..782 CDD:275380
LRR_8 762..817 CDD:290566
leucine-rich repeat 783..806 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D303561at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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