DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tl and chp

DIOPT Version :9

Sequence 1:NP_001262995.1 Gene:Tl / 43222 FlyBaseID:FBgn0262473 Length:1117 Species:Drosophila melanogaster
Sequence 2:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster


Alignment Length:1044 Identity:223/1044 - (21%)
Similarity:374/1044 - (35%) Gaps:330/1044 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ALLVIILQLLQWPG-SEAS-FGRD-------ACSEMSIDGLCQCAPIMSEYEIICPANAENPTF- 65
            |.|.|.|.::.|.. :.|| |.|:       .|   :.:.:|.|:...::..|:...|...|.. 
  Fly    12 AFLTITLMIMIWMSLARASMFDREMEETHYPPC---TYNVMCTCSKSSTDLGIVHCKNVPFPALP 73

  Fly    66 RLTIQPKDYVQIMCN--LTDTTDYQQLPKKLRIGEVDRVQMRRCMLPGHTPIASILD--YLGIV- 125
            |:..|.|.::..|.|  |.:...|          .:....|.|..:.|: .:..|.|  :.|:. 
  Fly    74 RMVNQSKVFMLHMENTGLREIEPY----------FLQSTGMYRLKISGN-HLTEIPDDAFTGLER 127

  Fly   126 SPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMR-NLSHLELRAN-IEEM 188
            |...||...::| :.|..:.|..|..|:........:|||..:....:. :|..|.||.| |.::
  Fly   128 SLWELILPQNDL-VEIPSKSLRHLQKLRHLDLGYNHITHIQHDSFRGLEDSLQTLILRENCISQL 191

  Fly   189 PSHLFDDLENLESIEFGSNKLRQMPRGIF-GKMPKLKQLNLWSNQL------------------- 233
            .||.|..|..||:::...|.|.::...:| ..||:|.:|.|..|.|                   
  Fly   192 MSHSFSGLLILETLDLSGNNLFEIDPNVFVDGMPRLTRLLLTDNILSEIPYDALGPLKSLRTLDI 256

  Fly   234 -HNLT-----KHDFE-GATSVLGID---IHDNGIEQLPHDVFAH--------------------- 267
             ||:.     ...:| .|::.|.:|   :..|.||.||.:.|.:                     
  Fly   257 SHNVIWSLSGNETYEIKASTKLNLDNLHLEYNHIEVLPPNSFKYFDTVNRTFFDGNPIHTLREDA 321

  Fly   268 ---------------LTNVTDI------------NLSANLFRSLPQGLFDHNKHLNEVRLMNNRV 305
                           |||::.:            :||.|....|...||::...|..:.:.:|::
  Fly   322 FKPARIREIYMRYCGLTNISPVAFDSLVNSLQILDLSGNNLTKLHHKLFNNFDVLRVISMRDNKI 386

  Fly   306 ----PLATL------------------PSRL-----FANQPELQILRL----------------- 326
                |..|.                  |:.|     ..|...|.|.||                 
  Fly   387 KIQKPTETFNAVHYTLLKLDLSGDRNDPTNLQTLRKMRNMRSLSISRLGSSSVGPEDFKDFGVEL 451

  Fly   327 ------RAELQSLPGDLFEHSTQITNISLGDNLLKT--------------------------LPA 359
                  ||.|..:....|:|...:..:...:|.:.:                          |||
  Fly   452 EDLQITRASLSGIQSHAFKHVRGLKRLDFSENGISSIENDAFHEIGHSLISLKMSHGYSGSALPA 516

  Fly   360 TLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLEDN----LLTG-ISGDIFSNLGNLVTL 419
            ..|.|..:|..||.|||.::.:.|:.|....||..|.|.||    :|.| ..|||.|.|..   :
  Fly   517 EPLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEE---I 578

  Fly   420 VMSRNRLRTIDSRAFVSTNGLRHLHLDHNDIDLQQPLLDIMLQTQINSPFGYMHGLLTLNLRNNS 484
            .:..|.|.:|....|.....||.||||.|.||..:           ...|..:..|..|:||.|.
  Fly   579 SLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIE-----------RRAFMNLDELEYLSLRGNK 632

  Fly   485 IIFVYNDWKNTMLQLRELDLSYNNISSLGYEDLAFLSQ----NRLHVNMTHNKIRRIAL-----P 540
            |..:.::....:.:|..||:::|.:.:..::   :..|    :.|:||::||:||::..     .
  Fly   633 INNLADESFQNLPKLEILDMAFNQLPNFNFD---YFDQVGTLSNLNVNVSHNQIRQLMYNSSWSG 694

  Fly   541 EDVHLGEGYNNNLVHVDLNDN-----------PLVCDCTIL----------------------WF 572
            .:.| |..|::|:..:||:.|           |.....|.|                      |.
  Fly   695 RNEH-GGMYHSNIKILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQWL 758

  Fly   573 IQLVRGVHKPQYSRQFKLRTDRLVCSQPNVLEGTPVRQIEPQTLICPLDFSDDPRERKCPRGCNC 637
            ......:|:..:......:..:||....|.|...|....:|...:..:|||.:            
  Fly   759 DLSYNWIHELDFDAFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHN------------ 811

  Fly   638 HVRTYDKALVINCHSGNLTHVPRLP-NLHKNMQLMELHLENNTLLRLPSANTPGYESVT--SLHL 699
                               |:..|| ||..|..:.:|.:.:|.:|::||::.....::|  .|||
  Fly   812 -------------------HLRGLPDNLFYNGGMEKLDVSHNMMLKIPSSSLSSLAALTLCELHL 857

  Fly   700 AGN---NLTSIDVDQLPTNLTHLDISWNH-------------------------LQMLNATVLGF 736
            :.|   .:.|:|:.....:|.:||||:|:                         |::::.:.:|.
  Fly   858 SNNFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDAVFATMPKLAVLDLSHNRDLKVMDKSFMGL 922

  Fly   737 LNRTMK--WRSVKLSGNPWMCDCTAKPLLLFTQDNFERIGDRNEMMCVNAEMP-----TRMVELS 794
            .|..:|  ..::.||..|   :...|.|..|      |:| .||:..:..|:.     .||::||
  Fly   923 ENSLIKLGLENISLSTVP---EIRLKYLREF------RLG-YNELPSIPQELAHNMSNLRMLDLS 977

  Fly   795 TNDI 798
            .||:
  Fly   978 NNDL 981

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TlNP_001262995.1 LRR_8 174..233 CDD:290566 21/61 (34%)
leucine-rich repeat 176..198 CDD:275380 10/22 (45%)
leucine-rich repeat 199..222 CDD:275380 6/23 (26%)
LRR_RI 216..542 CDD:238064 104/493 (21%)
LRR_8 221..281 CDD:290566 24/136 (18%)
leucine-rich repeat 223..270 CDD:275380 18/111 (16%)
leucine-rich repeat 271..294 CDD:275380 6/34 (18%)
leucine-rich repeat 295..320 CDD:275380 7/51 (14%)
leucine-rich repeat 321..343 CDD:275380 9/44 (20%)
LRR_8 342..402 CDD:290566 20/89 (22%)
leucine-rich repeat 344..367 CDD:275380 6/48 (13%)
leucine-rich repeat 368..391 CDD:275380 8/22 (36%)
LRR_8 390..450 CDD:290566 24/64 (38%)
leucine-rich repeat 392..415 CDD:275380 12/27 (44%)
leucine-rich repeat 416..439 CDD:275380 4/22 (18%)
leucine-rich repeat 440..474 CDD:275380 10/33 (30%)
leucine-rich repeat 475..498 CDD:275380 6/22 (27%)
LRR_8 477..534 CDD:290566 15/60 (25%)
leucine-rich repeat 499..520 CDD:275380 4/20 (20%)
leucine-rich repeat 523..552 CDD:275380 10/33 (30%)
LRRCT 561..619 CDD:214507 12/90 (13%)
LRRNT 631..667 CDD:214470 5/36 (14%)
leucine-rich repeat 664..693 CDD:275380 7/28 (25%)
LRR_8 669..726 CDD:290566 18/86 (21%)
leucine-rich repeat 694..715 CDD:275380 7/25 (28%)
leucine-rich repeat 716..737 CDD:275380 8/45 (18%)
LRRCT 751..800 CDD:214507 15/53 (28%)
TIR 858..996 CDD:214587
chpNP_001263137.1 leucine-rich repeat 84..103 CDD:275380 4/28 (14%)
LRR_8 102..163 CDD:290566 14/62 (23%)
leucine-rich repeat 104..128 CDD:275380 6/24 (25%)
LRR_RI <128..261 CDD:238064 35/133 (26%)
leucine-rich repeat 129..152 CDD:275380 6/23 (26%)
LRR_8 152..212 CDD:290566 17/59 (29%)
leucine-rich repeat 153..177 CDD:275380 4/23 (17%)
leucine-rich repeat 178..201 CDD:275380 10/22 (45%)
LRR_8 202..261 CDD:290566 14/58 (24%)
leucine-rich repeat 202..226 CDD:275380 6/23 (26%)
leucine-rich repeat 227..250 CDD:275380 5/22 (23%)
leucine-rich repeat 251..279 CDD:275380 4/27 (15%)
leucine-rich repeat 280..326 CDD:275380 7/45 (16%)
LRR_8 326..386 CDD:290566 11/59 (19%)
leucine-rich repeat 327..348 CDD:275380 3/20 (15%)
leucine-rich repeat 352..375 CDD:275380 6/22 (27%)
leucine-rich repeat 376..401 CDD:275380 4/24 (17%)
leucine-rich repeat 426..450 CDD:275378 4/23 (17%)
LRR_RI <448..651 CDD:238064 53/216 (25%)
leucine-rich repeat 451..474 CDD:275380 5/22 (23%)
LRR_8 473..559 CDD:290566 20/85 (24%)
leucine-rich repeat 475..524 CDD:275380 6/48 (13%)
leucine-rich repeat 500..519 CDD:275380 3/18 (17%)
leucine-rich repeat 525..548 CDD:275380 8/22 (36%)
leucine-rich repeat 549..574 CDD:275380 10/24 (42%)
LRR_8 573..633 CDD:290566 21/73 (29%)
leucine-rich repeat 575..598 CDD:275380 5/25 (20%)
leucine-rich repeat 599..622 CDD:275380 10/33 (30%)
LRR_8 622..683 CDD:290566 16/63 (25%)
leucine-rich repeat 623..646 CDD:275380 6/22 (27%)
leucine-rich repeat 647..730 CDD:275380 20/86 (23%)
leucine-rich repeat 648..673 CDD:275380 4/27 (15%)
leucine-rich repeat 674..705 CDD:275380 10/31 (32%)
LRR_8 704..763 CDD:290566 8/58 (14%)
leucine-rich repeat 731..754 CDD:275380 2/22 (9%)
LRR_8 753..813 CDD:290566 11/90 (12%)
leucine-rich repeat 755..778 CDD:275380 2/22 (9%)
leucine-rich repeat 779..802 CDD:275380 6/22 (27%)
leucine-rich repeat 803..823 CDD:275380 8/50 (16%)
leucine-rich repeat 852..876 CDD:275380 6/23 (26%)
LRR_8 854..910 CDD:290566 12/55 (22%)
LRR_RI <877..>1006 CDD:238064 27/115 (23%)
leucine-rich repeat 877..900 CDD:275380 6/22 (27%)
leucine-rich repeat 901..925 CDD:275380 2/23 (9%)
leucine-rich repeat 926..946 CDD:275380 4/22 (18%)
LRR_8 947..1004 CDD:290566 13/42 (31%)
leucine-rich repeat 947..970 CDD:275380 7/29 (24%)
leucine-rich repeat 971..993 CDD:275380 6/11 (55%)
LRR_8 992..1049 CDD:290566
leucine-rich repeat 994..1014 CDD:275380
leucine-rich repeat 1019..1042 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453804
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.