DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tl and tlr3

DIOPT Version :9

Sequence 1:NP_001262995.1 Gene:Tl / 43222 FlyBaseID:FBgn0262473 Length:1117 Species:Drosophila melanogaster
Sequence 2:NP_001013287.2 Gene:tlr3 / 403126 ZFINID:ZDB-GENE-040219-7 Length:903 Species:Danio rerio


Alignment Length:958 Identity:214/958 - (22%)
Similarity:374/958 - (39%) Gaps:238/958 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 THIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLN 227
            |.:|.|:.|  .::||..|: .:..:  |::.:|.|:::   ..|.|..:.:.:...:|.|:.||
Zfish    50 TDLPTNITT--LDVSHNRLK-TLSSL--HMYTNLVNIDA---SYNSLAGIEKDLCLSLPHLQFLN 106

  Fly   228 LWSNQLHNLTKHDFEGATSVLGIDIHDNGIEQLPHDVFAHLTNVTDINLSANLFRSLPQGLFDHN 292
            :..||::.:::.:.:....:..:|:.||.: :|..:.|:.|.|:|.:::|.|...|...|.....
Zfish   107 VQHNQVYLISEKNLKNCFHLTQLDLSDNKL-KLQGEPFSLLKNLTWLDVSRNKLTSAKLGTEPQL 170

  Fly   293 KHLNEVRLMNNRVPLATLPSRLF-ANQPELQILRLRA---------------ELQSLPGD----- 336
            .:|..:.|..|.:.:.......| :|....::|.|.:               .|..|..|     
Zfish   171 PNLVTLVLSGNNINILQENDFSFLSNSSSFRVLILSSLILKKVENGCFKAIDTLSDLVLDSSKLT 235

  Fly   337 ------LFEH--STQITNISLGDNLLKTLPATLLE--HQVNLLSLDLSNNRLTHLPDSLFAHTTN 391
                  |||.  .|.:.|:||......||..|..:  .:..:..||||.||::.:.|..|.....
Zfish   236 SQFTTSLFEELADTALRNLSLKSTEQVTLSNTTFQGLEKTKITVLDLSENRISKIVDGAFQWLPQ 300

  Fly   392 LTDLRLEDNLLTGISGDIFSNLGNL------VTLVMSRNRLRTIDSRAF-----------VST-- 437
            |..|.||.|.:..::.|.||.||||      ..|:.|...|..||..:|           .:|  
Zfish   301 LEFLSLEHNTIRHLTNDSFSGLGNLRQLNLRKALIKSHASLPVIDDFSFQHLVQLEYLCMANTAF 365

  Fly   438 --------NGLRHLHLDHNDIDLQQPLLDIMLQTQINSPFGYMHG---LLTLNLRNNSIIFVYND 491
                    :|||:|    ..:||...:..|  :|..|..|..:..   |.||||           
Zfish   366 RELTEQIFSGLRNL----KTLDLSWSITGI--KTVTNKTFAGLQESPLLQTLNL----------- 413

  Fly   492 WKNTMLQLRELD----LSYNNISSLGYEDLAFLSQNRLHVNMTHNKIRRIALPEDVHLGEGYNNN 552
               |.:.:.:|:    .|..|:|:|      .:|:|.::..:..|:.:.:             :|
Zfish   414 ---TGMGINKLEPGAFSSLGNLSNL------LMSRNFINQQLQGNEFKGL-------------SN 456

  Fly   553 LVHVDLNDNPLVCDCTILWFIQLVRGVHKPQYSRQFKLRTDRLVCSQPNVLEGTPVRQIEPQTLI 617
            :..:|::.|......|...|:.:            ..|||.:|    ...|:||           
Zfish   457 IKEIDMSINQQSISLTNASFVHV------------STLRTLKL----GRALKGT----------- 494

  Fly   618 CPLDFSDDPRERKCPRGCNCHVRTYDKALVINCHSGNLTHVPRLPNLHKNMQLME-------LHL 675
              ||....|            .|......:::..:.|:.::        |..|:|       :.:
Zfish   495 --LDMEPSP------------FRPLVNLTILDLSNNNIANI--------NADLLEGLYNLKVVKM 537

  Fly   676 ENNTLLRLPSANTPG-----YESVTSLHLAGNNLTSIDVDQLPTN-------LTHLDISWNHLQM 728
            ::|.|.||.....||     .:..|:|...  ||....:|::|.|       |..|.:..|.|..
Zfish   538 QHNNLARLWKMANPGGPVLFLKDATNLSYL--NLDYNGIDEIPPNAFRGFSELHELSLRGNLLDQ 600

  Fly   729 LNATVLGFLNR----------------------TMKWRSVKLSGNPWMCDCTAKPLLLFTQ---- 767
            |:|:|...||.                      ..|.:.:.:..||:  |||.:.:|.|::    
Zfish   601 LHASVFDDLNSLKYLHLQKNLITSVQRATFGVPLSKLKELNMDHNPF--DCTCESILWFSEWLNS 663

  Fly   768 DNFERIGDRNEMMC--VNAEMPTRMVE---LSTNDICPAEKGVFIALAVVIALTGLLAGFTAALY 827
            .|....|.....:|  .||.....::.   ||..|:.|     |.||.::.:...|:..|.:.|.
Zfish   664 TNTSVPGFPQSYICNTPNAYFNHSVMNFDPLSCKDMTP-----FKALYILSSTAVLMLLFISFLV 723

  Fly   828 YKFQTEIKI-WLYAHNLLLWFVTEEDLDKDK-KFDAFISYSHKDQSFIEDYLVPQLEHGPQKFQL 890
            :.....|:. |....|.:|..:.:..:.:.: :|||:|.::.:|:|::|..|: .||.....|  
Zfish   724 HFQGWRIQFYWNIMVNRMLGSLKDAKVTEGRFQFDAYIIHAGEDKSWVERSLL-SLEDKDLNF-- 785

  Fly   891 CVHERDWLVGGHIPENIMRSVADSRRTIIVLSQNFIKSEWARLEFRAAH--RSALNEGRSRIIVI 953
            ...:||...|....|.|:.::..||:.|.|:::..:|..|.| :|:|.|  ...:.:.|..:|:|
Zfish   786 FYEQRDSTPGHSRLETIVDNMVYSRKIIFVITEMLLKDPWCR-QFKAHHALHHVMEDNRDSLILI 849

  Fly   954 IYSDIGDVEKLDEEL---KAYLKMNTYLKW-----GDPWFWDKLRFAL 993
            ...|:.|. .|:..|   :..||....|.|     ..|.|..|||.||
Zfish   850 FLEDVTDY-NLNRSLHLRRGMLKPKCVLYWPLHKERIPAFHQKLRSAL 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TlNP_001262995.1 LRR_8 174..233 CDD:290566 13/58 (22%)
leucine-rich repeat 176..198 CDD:275380 5/21 (24%)
leucine-rich repeat 199..222 CDD:275380 2/22 (9%)
LRR_RI 216..542 CDD:238064 89/390 (23%)
LRR_8 221..281 CDD:290566 16/59 (27%)
leucine-rich repeat 223..270 CDD:275380 11/46 (24%)
leucine-rich repeat 271..294 CDD:275380 5/22 (23%)
leucine-rich repeat 295..320 CDD:275380 5/25 (20%)
leucine-rich repeat 321..343 CDD:275380 8/49 (16%)
LRR_8 342..402 CDD:290566 20/61 (33%)
leucine-rich repeat 344..367 CDD:275380 6/24 (25%)
leucine-rich repeat 368..391 CDD:275380 8/22 (36%)
LRR_8 390..450 CDD:290566 23/86 (27%)
leucine-rich repeat 392..415 CDD:275380 9/22 (41%)
leucine-rich repeat 416..439 CDD:275380 8/49 (16%)
leucine-rich repeat 440..474 CDD:275380 9/33 (27%)
leucine-rich repeat 475..498 CDD:275380 6/22 (27%)
LRR_8 477..534 CDD:290566 13/60 (22%)
leucine-rich repeat 499..520 CDD:275380 5/24 (21%)
leucine-rich repeat 523..552 CDD:275380 2/28 (7%)
LRRCT 561..619 CDD:214507 10/57 (18%)
LRRNT 631..667 CDD:214470 2/35 (6%)
leucine-rich repeat 664..693 CDD:275380 9/40 (23%)
LRR_8 669..726 CDD:290566 18/75 (24%)
leucine-rich repeat 694..715 CDD:275380 6/20 (30%)
leucine-rich repeat 716..737 CDD:275380 7/20 (35%)
LRRCT 751..800 CDD:214507 15/57 (26%)
TIR 858..996 CDD:214587 44/146 (30%)
tlr3NP_001013287.2 LRR_RI <49..183 CDD:238064 33/141 (23%)
leucine-rich repeat 57..77 CDD:275380 5/24 (21%)
leucine-rich repeat 78..101 CDD:275380 4/25 (16%)
leucine-rich repeat 102..125 CDD:275380 5/22 (23%)
LRR_8 125..183 CDD:290566 15/58 (26%)
leucine-rich repeat 126..148 CDD:275380 6/22 (27%)
leucine-rich repeat 149..172 CDD:275380 5/22 (23%)
leucine-rich repeat 173..276 CDD:275380 20/102 (20%)
LRR_8 275..331 CDD:290566 20/55 (36%)
leucine-rich repeat 278..300 CDD:275380 8/21 (38%)
leucine-rich repeat 301..324 CDD:275380 9/22 (41%)
leucine-rich repeat 325..354 CDD:275380 7/28 (25%)
leucine-rich repeat 355..378 CDD:275380 3/22 (14%)
leucine-rich repeat 379..404 CDD:275380 7/30 (23%)
LRR_8 406..466 CDD:290566 16/92 (17%)
leucine-rich repeat 408..431 CDD:275380 8/36 (22%)
leucine-rich repeat 432..456 CDD:275380 5/42 (12%)
leucine-rich repeat 457..507 CDD:275380 15/90 (17%)
leucine-rich repeat 482..498 CDD:275380 9/32 (28%)
leucine-rich repeat 508..531 CDD:275380 4/30 (13%)
leucine-rich repeat 532..563 CDD:275380 6/30 (20%)
LRR_8 562..622 CDD:290566 16/61 (26%)
leucine-rich repeat 564..587 CDD:275380 6/24 (25%)
leucine-rich repeat 588..611 CDD:275380 8/22 (36%)
leucine-rich repeat 612..630 CDD:275380 0/17 (0%)
LRRCT 645..>683 CDD:214507 11/39 (28%)
TIR 756..898 CDD:214587 44/146 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D147327at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24365
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
54.880

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