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Protein Alignment Tl and trn

DIOPT Version :9

Sequence 1:	NP_001262995.1	Gene:	Tl / 43222	FlyBaseID:	FBgn0262473	Length:	1117	Species:	Drosophila melanogaster
Sequence 2:	NP_001261796.1	Gene:	trn / 39491	FlyBaseID:	FBgn0010452	Length:	751	Species:	Drosophila melanogaster

Alignment Length:	470	Identity:	116/470 - (24%)
Similarity:	195/470 - (41%)	Gaps:	103/470 - (21%)

- Green bases have known domain annotations that are detailed below.

  Fly   197 ENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLWSNQLHNLTKHDFEGATSVLGIDIHDNGIEQLP 261
            :|...::.|..:|..:|..:   .|.:::|.:.||::..:                 |:.|:
  Fly    38 DNTLVVQCGEGQLDVLPIAL---NPSIQRLVIKSNKIKTI-----------------DSSIQ--- 79

  Fly   262 HDVFAHLTNVTDINLSANLFRSLPQGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQILRL 326
              .:|.|   |.::||:|...::||..|.:.|.|.||.|.:|::  ..:.::.|.....:.:|.|
  Fly    80 --FYAEL---TFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKI--GQISNKTFIGLSAVTVLNL 137

  Fly   327 RA-ELQSLPGDLFEHSTQITNISLGDNLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDS-LFAHT 389
            |. ::..|....|....:|..::||:|.:..|.....:....|..|.|.:|.||.:||. :|...
  Fly   138 RGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAM 202

  Fly   390 TNLTDLRLEDNLLTGISGDIFSNLGNLVTLVMSRNRLRTIDSRAFVSTNGLRHLHLDHNDIDLQQ 454
            .:|.:|.|..|.|..|..|.|.:|..|..|.:....||.|...:|:....||.|.|..|.:|
  Fly   203 PSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLD--- 264

  Fly   455 PLLDIMLQTQINSPFGYMHGLLTLNLRNNSIIFVYNDWK------------------NTMLQLRE 501
                     :|.|.     ||..| :|...:....||::                  |..|:|:.
  Fly   265 ---------RIPSV-----GLSKL-VRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKR 314

  Fly   502 L---------DLSYNNISS----LGYED--LAFLSQNRLHVNMTHNKIRRIALPEDVHLGEGYN- 550
            :         :|.|.|:||    |..::  |:.|||.: ||.:..|.:..:|        ||..
  Fly   315 VMTGAFSDNGNLEYLNLSSNKMLLEVQEGALSGLSQLK-HVVLKANALTSLA--------EGLFP 370

  Fly   551 -NNLVHVDLNDNPLVCDCTILWFIQLVRGVHKPQYSRQFKLRTDRLVCSQPNVLEGTPVRQIEPQ 614
             .:|..:||::|||.|||.::|...|:...:..|..      ...|:|..|..|.|..:|.:.|.
  Fly   371 WKDLQTLDLSENPLSCDCRVMWLHNLLVAKNASQDD------VSELLCEFPERLRGESLRHLNPA 429

  Fly   615 TLICPLDFSDDPRER 629
            .:.|.   ..|||::
  Fly   430 MMGCT---HADPRKQ 441

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.