DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6420 and wdr20b

DIOPT Version :9

Sequence 1:NP_001287545.1 Gene:CG6420 / 43218 FlyBaseID:FBgn0039451 Length:909 Species:Drosophila melanogaster
Sequence 2:XP_003200833.1 Gene:wdr20b / 100535470 ZFINID:ZDB-GENE-041014-234 Length:572 Species:Danio rerio


Alignment Length:909 Identity:305/909 - (33%)
Similarity:390/909 - (42%) Gaps:337/909 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MANQLDASVKDDLKTQFVTREGTYRLLTLSEYSRPNRVGYSSNQSSPQVRVSMVTLPSPAQGKLG 65
            ||.:......:::||||.||||.|:||..|||||||||.::|..|:| |:||.|           
Zfish     1 MAAEGGGKEANEIKTQFSTREGVYKLLPNSEYSRPNRVPFNSQGSNP-VKVSFV----------- 53

  Fly    66 SDVGVGTPVGGGTAGANTTTTNGSSPGASPTGAAGASTAISNGGAGGDYSHSNHNSNSAGNNTVE 130
                                                                             
Zfish    54 ----------------------------------------------------------------- 53

  Fly   131 ARLGGGISMHSMMNGGVVDQNGVATNQVLGGDRICFNFGRDLYVYSFRGAKKGTEMSKPIDKKFY 195
                           .|.||:|       .|:|||||.||:||.|.::|.||..::||||||:.|
Zfish    54 ---------------NVNDQSG-------NGERICFNVGRELYFYIYKGVKKAADLSKPIDKRIY 96

  Fly   196 KGTNPSCHDFNISSATPTGAPLLVGFTTGQIQLVSPHVGPREVRKLFNEERLIDKTKVTCLKWLP 260
            |||.|:|||.|..:||.....|||||:.||:||:.|.  .:|..|||||:|||||:.||||||:|
Zfish    97 KGTLPTCHDSNALTATAESVSLLVGFSAGQVQLIDPI--KKETSKLFNEDRLIDKSAVTCLKWIP 159

  Fly   261 NSPHLFLAAHASGHLYLYNEELPCAATAPSYQPFKLGDGYTILTSKSKTTRNPLFKWVFSTDNCC 325
            .|.:|||.:|:||.|||||.|..|..|:|.||..|.|:.||:.|.|||:.||||.:|  :.....
Zfish   160 GSENLFLVSHSSGCLYLYNVEHTCGTTSPHYQLLKQGESYTVHTGKSKSARNPLLRW--TVGEGA 222

  Fly   326 VNEFCFSPCGSHLAVVSQDGFLRVFHYDTMELLGIARSYFGGFLCVCWSPDGKYIVVGGEDDLVT 390
            ||||.|||.|..||...||||||||.:|:.||.|..:|||||.|||||||||:|||.||||||||
Zfish   223 VNEFAFSPDGKFLACAGQDGFLRVFCFDSAELHGTMKSYFGGLLCVCWSPDGRYIVTGGEDDLVT 287

  Fly   391 VWSLHERRVVARGQGHRSWVSVVAFDPYTTSYTNWDGGDFSDDENQMNEYSHSREARFSGDSTAN 455
            |||..:.||:|||:||:|||||||||...||..:.|......||:...:::.:||...|..|..:
Zfish   288 VWSFSDSRVIARGRGHKSWVSVVAFDHCITSVQDCDAEFSGSDEDFQMQFNGNRERANSAQSRIS 352

  Fly   456 GGFEGFDRNSTPVHADRNGPHSASFRSDASSAEKLMSYRLGSVSQDTQICLWDITEDVLRHPLVL 520
                  .||||                |..|    ::||.|||.||||:||||:|||:| .||..
Zfish   353 ------KRNST----------------DGRS----VTYRFGSVGQDTQMCLWDLTEDIL-FPLTR 390

  Fly   521 RQPANSERAYLNGGVDEEAEAEDGIKVIRPVAMSGQATGQQAESGSCSPTREAAGGGTGNGAGEH 585
            .:.                                |.....||:.:.        |..||     
Zfish   391 TRT--------------------------------QTNVTNAETTTL--------GANGN----- 410

  Fly   586 SNSSSSKFSTANCTISSQSSPDDCDTEAATPASTSSNAGAGSVAGAGAVASTKQNNRNHGTGNSI 650
             ||::|....:|                :.|.|                                
Zfish   411 -NSANSPLPRSN----------------SLPQS-------------------------------- 426

  Fly   651 KFPNCISATKSDSIDGGGGSGSGQRPSQTTSGYNSKTSNSSNKSSNSGSGFSAFNSLTQRLSNFS 715
                                 ||..|       |:....|...|:...:|.|.|.:|.       
Zfish   427 ---------------------SGNSP-------NTHKPQSIVDSALIATGVSKFATLA------- 456

  Fly   716 FLSSSEKKGAGYEGSHSTAHRQHRKAMSMLKSYNQHNHTGGHNNHSQSNNSSSSNFGHSSTLDSN 780
             |..:.|:            ::|::                  |||.|..|:.|           
Zfish   457 -LHEARKE------------KEHKR------------------NHSISYISNKS----------- 479

  Fly   781 AAGAIGSSSTAHSFGSLKLSRSSHHSSLATAAHASGSAAGSGSGVSSFDPMQLIGTPACPRFDEC 845
                           |.||::            ...|..|...|..:      :||..|||.:|.
Zfish   480 ---------------SDKLNQ------------LISSRGGKSDGCKT------LGTMQCPRMEEI 511

  Fly   846 PLLEPLVCKKIAHERLTALIFREDCFLTACQDGFIYTWARPGHATHATQHLSPGQAAAPGGTVI 909
            |||||||||||:|||||.|||.|||.:||||:||:.||||||.....:   |.....:|.|||:
Zfish   512 PLLEPLVCKKISHERLTVLIFLEDCLVTACQEGFVCTWARPGKLGLLS---SQNPTNSPSGTVV 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6420NP_001287545.1 WD40 <193..509 CDD:225201 163/315 (52%)
WD40 repeat 208..249 CDD:293791 20/40 (50%)
WD40 repeat 284..330 CDD:293791 21/45 (47%)
WD40 <297..417 CDD:295369 77/119 (65%)
WD40 repeat 369..404 CDD:293791 27/34 (79%)
wdr20bXP_003200833.1 WD40 <147..>386 CDD:225201 139/267 (52%)
WD40 149..389 CDD:295369 138/268 (51%)
WD40 repeat 152..201 CDD:293791 28/48 (58%)
WD40 repeat 224..264 CDD:293791 24/39 (62%)
WD40 repeat 265..301 CDD:293791 27/35 (77%)
WD40 repeat 308..350 CDD:293791 14/41 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586396
Domainoid 1 1.000 176 1.000 Domainoid score I3561
eggNOG 1 0.900 - - E2759_KOG2394
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 470 1.000 Inparanoid score I1477
OMA 1 1.010 - - QHG49265
OrthoDB 1 1.010 - - D308422at33208
OrthoFinder 1 1.000 - - FOG0002009
OrthoInspector 1 1.000 - - otm26210
orthoMCL 1 0.900 - - OOG6_102737
Panther 1 1.100 - - O PTHR14107
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1319
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.810

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