DRSC/TRiP Functional Genomics Resources

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Protein Alignment Yif1 and Yif1a

DIOPT Version :10

Sequence 1:NP_651498.1 Gene:Yif1 / 43217 FlyBaseID:FBgn0288631 Length:402 Species:Drosophila melanogaster
Sequence 2:XP_063133038.1 Gene:Yif1a / 171441 RGDID:628749 Length:298 Species:Rattus norvegicus


Alignment Length:296 Identity:114/296 - (38%)
Similarity:163/296 - (55%) Gaps:45/296 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 APAPAPV---NSYGFDPNLGQPSQHIQQPPQQQPGYGYGAPPPQQAAGPPTYGIGAPQPVAPPTG 126
            ||.|.|:   .|.|:...||                ||.||....|...... :|.|        
  Rat    19 APNPPPLFDDTSGGYSSQLG----------------GYPAPGADVAFNVNNL-LGDP-------- 58

  Fly   127 QYPQFAMFQQPIVQDMAMQYGQKLADQGKQIMENQFEKWVPVAKLKYYFAVDNAYVGRKLRLLFF 191
                        |.:|||.||..:|.|||.|:..:..::|.:.||||:||||.|||.:||.||.|
  Rat    59 ------------VANMAMAYGSSIASQGKDIVHKELHRFVSINKLKYFFAVDTAYVAKKLGLLVF 111

  Fly   192 PYMHKDWSLRYDQEHPVQPRYDVNAPDLYLPTMGYITYVIVAGLLLGMQKRFSPEQLGIQASSAM 256
            ||.|::|.::|..:.|:.||.|:||||||:|||.:||||::||:.||:|:|||||.||:.||:|:
  Rat   112 PYTHQNWKVQYSHDVPLPPRKDLNAPDLYIPTMAFITYVLLAGMALGIQQRFSPEVLGLCASTAL 176

  Fly   257 AYSIFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVCLMVSTLFFKSGYYIALAYTSFSF 321
            .:.:.|::...|.||:..|::.|.|..|||::|||||.:::.::...||...|||:|||:||.:.
  Rat   177 VWVLMEVLALLLGLYLATVRSELGTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSAL 241

  Fly   322 GFF--MLRTLRTKLLQDNSPAAPSGAI---NYDPYG 352
            .:|  .:......||.|..|.....|:   .||..|
  Rat   242 MYFTVSMGCSSPLLLWDTCPFLAHSALLSSRYDLCG 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Yif1NP_651498.1 YIF1 135..385 CDD:461081 99/223 (44%)
Yif1aXP_063133038.1 None

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