DRSC/TRiP Functional Genomics Resources

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Protein Alignment plum and nphs1

DIOPT Version :9

Sequence 1:NP_001163744.1 Gene:plum / 43197 FlyBaseID:FBgn0039431 Length:1298 Species:Drosophila melanogaster
Sequence 2:NP_001035777.1 Gene:nphs1 / 692352 ZFINID:ZDB-GENE-051102-1 Length:1242 Species:Danio rerio


Alignment Length:637 Identity:133/637 - (20%)
Similarity:207/637 - (32%) Gaps:202/637 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 SAVISDRITVEYPVLKRLFPGQ---QQAANISALENKPLVLSCPFLSVP-AARFSWYFGNDSLTN 204
            |.|:|:.:...|. |..|||.:   :|...:..:|::...|.....:.| .....|.|..:.|..
Zfish   611 SNVLSEGVNNFYS-LDVLFPPEFSAEQPDEVQVIEDETATLPAKVSANPDEITCEWIFQGEKLVK 674

  Fly   205 DNSALILTNGTLILRHLRLEQAGKYKCVAQNTFASKTHRQFIWQLQ---VEPKDATFY---PKNE 263
                               |:..:|      ||:.       |.|:   |..:|...|   ..|.
Zfish   675 -------------------ERDPRY------TFSD-------WTLEIVNVSRRDGGDYIIECSNA 707

  Fly   264 AGITETAVS-EAQLLPA--FQNATVFVPAGGSVLLQCHAVADFVPIV-------WYLQPPNNKMV 318
            .|...|.:. :.|..|.  .::..|||..|.:..|.|  |||..||.       |..:...:::.
Zfish   708 EGSNRTKLRLDVQYSPTVRMKSDPVFVNIGDTADLLC--VADANPITSSMFSWKWMGEGERDELG 770

  Fly   319 RLSNNSVAYSITNASIAR-HEGRYSC-----ITPLETQNFQVIVTTPP---------RIVSRLPV 368
            ..|.:.....:|...:.| ..|.|.|     |:|..:...|:||...|         ::.||   
Zfish   771 EESEDDGTGVLTIYEVTRDRAGVYQCTADNGISPTGSVEGQLIVRFAPDLQKGPQWRKVASR--- 832

  Fly   369 EVVYIG---LSRTLTCRAEGHPEPSITWYHNGVHLNSSYTRYISGNE----LH------VHSFDS 420
                 |   ....:.|:|:|.|.....|..||..|:....||....|    :|      ::...:
Zfish   833 -----GDGSNDANVVCQAQGVPRVQFRWAKNGFPLDLGNPRYEETTESTGTIHTSILTVINVSAA 892

  Fly   421 KEEGIYQCVARNVAGEDSATGELRFNRQLEEVNPLQNIRCYPHSFHSINIT------FDSRTLTS 479
            .:..|:.|.|.|..||||...:|......:..:.|:.:|     ....::|      ||. .||.
Zfish   893 LDYAIFTCTAHNSMGEDSLDIQLLSTNHPDPPSDLKLLR-----VDQTSVTLEWMPGFDG-GLTQ 951

  Fly   480 MF----------------------VVYIVRN-NPHSWTSFSPMKLN---QTSY-------VVIST 511
            :|                      .||.|.. ||.:..:||...||   ::||       .|.:.
Zfish   952 IFRVRYQWAGSASYMYVDVFPPTATVYTVTGLNPSTMYNFSVNALNSIGESSYADNNKILTVTTA 1016

  Fly   512 D---------------------LPVYEPFALIT-RVLF---------------------PTTEVR 533
            |                     ||||....|:. .|||                     .|:.:.
Zfish  1017 DAKEADGGVSTADQDSALAGGGLPVYVVVILVVGGVLFLLNPFICFLLARWKRRRSLKGNTSSIS 1081

  Fly   534 TGTLVPQQMILSSLRSTP-----------VTCCTQGLMLRPIAVGNDTFVKWSQGQLENKKYFIL 587
            ..|...:|      |||.           :....|..:|...:...|:.|..|.|:.||..|:..
Zfish  1082 QETKSEEQ------RSTASSSTRYASRELINASAQRTLLVDSSSEPDSSVYESYGRQENPHYYYP 1140

  Fly   588 QFSIN---HTHPHPAQLLNGSLQGT--LTSVEEKADQVRHHLTEIQPLNQSA 634
            ..:.:   :.||...:..:|. .||  .|.|.|:...:...|....||..:|
Zfish  1141 TEAYSPALYAHPEGPEDCDGR-HGTSPFTHVYEEVRGMYEDLQACSPLPPAA 1191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
plumNP_001163744.1 IG_like 170..241 CDD:214653 10/71 (14%)
IGc2 175..235 CDD:197706 8/60 (13%)
IG_like 284..356 CDD:214653 21/84 (25%)
I-set 360..443 CDD:254352 24/104 (23%)
IGc2 378..435 CDD:197706 16/66 (24%)
FN3 804..886 CDD:238020
nphs1NP_001035777.1 IG_like 33..126 CDD:214653
Ig 133..216 CDD:386229
Ig 261..313 CDD:386229
Ig 333..419 CDD:386229
ig 439..511 CDD:365836
IG_like 637..719 CDD:214653 18/113 (16%)
Ig_3 723..800 CDD:372822 19/78 (24%)
Ig_hNephrin_like 814..922 CDD:143250 26/115 (23%)
FN3 921..1012 CDD:238020 19/96 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11640
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.100

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