DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment plum and Fndc1

DIOPT Version :9

Sequence 1:NP_001163744.1 Gene:plum / 43197 FlyBaseID:FBgn0039431 Length:1298 Species:Drosophila melanogaster
Sequence 2:XP_006523412.1 Gene:Fndc1 / 68655 MGIID:1915905 Length:1833 Species:Mus musculus


Alignment Length:728 Identity:121/728 - (16%)
Similarity:205/728 - (28%) Gaps:269/728 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   763 RNIANSLLLVTGLKPDTRYNLHFYNCKTRIFYGDID--------EKTEQDPPGTISNSKLI---- 815
            :.::|..:||..|.|||     .|....||..|:.|        ::|.:..|.|...:..:    
Mouse   310 KQVSNRRVLVDSLIPDT-----VYEFAVRISQGERDGKWSASIFQRTPESAPTTAPENLRVWPVS 369

  Fly   816 -KQNGLKLMWEPPINPNGRVHHYDIRWSLDNVTHEAIVKECTKCSYKFPNVSETAKIHVAVRVMG 879
             |...:.:.|:......|:|..|.:.::              .....|...|.|...|....::.
Mouse   370 GKPTVVTVSWDALPESEGKVKEYILSYA--------------PALKPFGAKSLTFSGHTTSALVD 420

  Fly   880 DTGAGAPMYFDMINNNHTWLKEESESSHSEVYSGIAIGSLLSIACVFLFGLFIIFQQRNFKARAQ 944
            ....|....|.:...|     ......||:.:. :||.:..|...         ..|.|.:..::
Mouse   421 GLQPGERYLFKIRATN-----RRGPGPHSKAFI-VAIPTTSSTEA---------SAQPNGRDSSR 470

  Fly   945 GPTHLTTP------------------------TDINFGNLSSASGMPGDSAGGLSGGTLQQDCHE 985
            .|..|..|                        :|:|  .:.:.|.:||.:......|.|.....|
Mouse   471 KPEKLQQPSSPAPKVAASSEHTPSAKNVKDALSDLN--KIRTNSVVPGKTQLHSKMGELDPQSTE 533

  Fly   986 -----------------MQTL-------IPRSRYHIELLP------------------------- 1001
                             ::||       :|....|..|.|                         
Mouse   534 VTGEEELDSLEDPRSSRLETLNQKQPLRVPSRSGHGVLTPGRTPARTGLPVLPRKEVMDRRGPSL 598

  Fly  1002 EHSLEYQTSTAAVAVVHLANGNGSVQVARRSDQDGAAQGDLGIAGVHNLSQLPLCGVGGTSPERK 1066
            :..|..:...:|.:..|..:.         .|.|...|.:...||               ||:.|
Mouse   599 DPHLRPRVEPSASSAYHQLSS---------IDNDSVDQNEYDQAG---------------SPDPK 639

  Fly  1067 TVQDAMLQE----AKAFYIPYRHTPPNAV--------------ALSSSKQCAVPSGSELEVIVPP 1113
            .|......:    ::...:|.||...|.:              :.:||:..:..|..:......|
Mouse   640 AVSSPSSPKNPARSRLTSVPSRHAASNMLRDKSRMQPGTKASSSSASSQSHSSTSEEDSSAAAQP 704

  Fly  1114 NSLPLVTTMPGLGVVGGGGSGGG------GVGGSSRR--SGSLSSSSASSSSNGSSKKQF----- 1165
            .|..|:.         ||.|...      .|..||.|  |.::|||..|:.:.||.::..     
Mouse   705 RSHSLLQ---------GGSSRPALSRDRQDVHASSSRMPSQTVSSSRPSALTEGSEEEDTSDGGA 760

  Fly  1166 ---------------------------HTNFVR------HSNSNDGIYLLAEEEAAATLTPTSER 1197
                                       |.:.:|      ||.:......|.......:.:|.|..
Mouse   761 DIDRAAGDTRRRAEATAQIQQTRPALGHFSLIRNKPFPAHSRNPSRFPKLRGPRLQPSRSPQSTS 825

  Fly  1198 EYAAVCLTNGFKLPADVAKSGGGTY-----------NTTNNNNSSTNT-------------SQKS 1238
              |:..||....|||...:.|...|           ...|:...|:::             ||:.
Mouse   826 --ASKVLTRAPSLPASHTRPGSDVYGDGEDEEPLPATVVNDRTPSSSSHPISGGSDTLRRGSQRG 888

  Fly  1239 ATAKERQP-------------RGNGNPISFSHNACKV------PANGPASVN-----VNHSSAVK 1279
            |:...::|             .|..:|:|......::      |...|:|.:     ..|.::..
Mouse   889 ASLYRKEPIPENSKAAGADVHPGGKSPLSSKAQGFQLSTDEGAPQTPPSSTSRQLSPARHPASRS 953

  Fly  1280 QSWPAATVVHRRA 1292
            |..|.:||..|.|
Mouse   954 QPSPGSTVPRRMA 966

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
plumNP_001163744.1 IG_like 170..241 CDD:214653
IGc2 175..235 CDD:197706
IG_like 284..356 CDD:214653
I-set 360..443 CDD:254352
IGc2 378..435 CDD:197706
FN3 804..886 CDD:238020 12/86 (14%)
Fndc1XP_006523412.1 FN3 37..117 CDD:214495
FN3 155..238 CDD:214495
FN3 258..351 CDD:238020 12/45 (27%)
FN3 359..449 CDD:238020 14/109 (13%)
PHA03247 <636..1209 CDD:223021 61/342 (18%)
FN3 1597..1688 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4221
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.