DRSC/TRiP Functional Genomics Resources

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Protein Alignment plum and Nphs1

DIOPT Version :9

Sequence 1:NP_001163744.1 Gene:plum / 43197 FlyBaseID:FBgn0039431 Length:1298 Species:Drosophila melanogaster
Sequence 2:NP_072150.1 Gene:Nphs1 / 64563 RGDID:620460 Length:1252 Species:Rattus norvegicus


Alignment Length:613 Identity:134/613 - (21%)
Similarity:210/613 - (34%) Gaps:184/613 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 TRLTI------SKPHSPYYLPCIPILTPYNHDQDNQPIYCSWYRNDVVVEQVSYRKNDFFIYDNG 121
            |.|||      .:|.....|.|:.|       ..|.|:..||.:....:|.|:.:........:.
  Rat   560 TNLTILANSSALRPGDALNLTCVSI-------SSNPPVNLSWDKEGERLEDVAAKPQSAPFKGSA 617

  Fly   122 TLR---LPTNEKASGE-YYCKIEWD---ESAVISDRITVEYPVLKRLFPGQQQAANISALENKPL 179
            ..|   |..:.:..|: ..|:...:   |:.....|..|.||   ..|.|:|..| ::.:|...:
  Rat   618 ASRSVFLRVSSRDHGQRVTCRAHSEALRETVSSFYRFNVLYP---PEFLGEQVRA-VTVVEQGQV 678

  Fly   180 VLSCPFLSVPAAR-FSWYFGNDSLTNDNSALILTNGTLILRHLRLEQAGKYKCVAQNTFASKTHR 243
            :|.....:.||.. |:|.|                     |..||..||           ...||
  Rat   679 LLPVSVSANPAPEAFNWTF---------------------RGYRLSPAG-----------GPRHR 711

  Fly   244 QF------IWQLQVEPKDATFYP---KNEAGITETA----VSEAQLLPAFQNATVFVPAGGSVLL 295
            ..      :|  .|...|..||.   :|..|..|..    |..|..:.|.::.|. |..||||.:
  Rat   712 ILSGGALQLW--NVTRADDGFYQLHCQNSEGTAEALLKLDVHYAPTIRALRDPTE-VNVGGSVDI 773

  Fly   296 QCHAVADFVPIV-----WYLQPPNNK------MVRLSNNSVA-YSITNASIARHEGRYSCI---- 344
            .|  ..|..||:     |.......:      |.::|..|.. ..|..|.::: .|.|.||    
  Rat   774 VC--TVDANPILPEMFSWERLGEEEEDLNLDDMEKVSKGSTGRLRIRQAKLSQ-AGAYQCIVDNG 835

  Fly   345 -TPLETQNFQVIVTTPPRIVSRLPV-EVVYIG---LSRTLTCRAEGHPEPSITWYHNGVHLNSSY 404
             .|......:::|...|::....|: :|...|   .|.||.|||.|.|....||..|||.|:...
  Rat   836 VAPAARGLVRLVVRFAPQVDQPTPLTKVAAAGDSTSSATLHCRARGVPNIDFTWTKNGVPLDLQD 900

  Fly   405 TRYISGNELH---VHS--------FDSKEEGIYQCVARNVAGEDSATGELRFNRQLEEV---NPL 455
            .|| :.:..|   |||        ..:::..:::|.|.|..|.|..      |.||..:   :|.
  Rat   901 PRY-TEHRYHQGVVHSSLLTIANVSAAQDYALFKCTATNALGSDHT------NIQLVSISRPDPP 958

  Fly   456 QNIRCYPHSFHSINIT----FD------------------------------SRTLTSM-----F 481
            ..::....|.||:.:.    ||                              :.|||.:     :
  Rat   959 LGLKVVSISPHSVGLEWKPGFDGGLPQRFQIRYEALETPGFLHVDVLPTQATTFTLTGLKPSTRY 1023

  Fly   482 VVYIVRNN------------PHSWTSFSPMKLNQTSYVVISTDLPVYEPFALITRVLFPTTEVRT 534
            .::::.:|            ..|.|:..|.:..:.:...:.|:||...|...:..|||     ..
  Rat  1024 RIWLLASNALGDSGLTDKGIQVSVTTPGPDQAPEDTDHQLPTELPPGPPRLPLLPVLF-----AV 1083

  Fly   535 GTLVPQQMILSSLRSTPVTCCTQGLMLR 562
            |.|    ::||:      ..|..||:.|
  Rat  1084 GGL----LLLSN------ASCVGGLLWR 1101

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
plumNP_001163744.1 IG_like 170..241 CDD:214653 12/71 (17%)
IGc2 175..235 CDD:197706 12/60 (20%)
IG_like 284..356 CDD:214653 21/88 (24%)
I-set 360..443 CDD:254352 29/97 (30%)
IGc2 378..435 CDD:197706 22/67 (33%)
FN3 804..886 CDD:238020
Nphs1NP_072150.1 Ig 52..128 CDD:299845
IG_like 52..127 CDD:214653
C2-set_2 155..242 CDD:285423
Ig_3 256..335 CDD:290638
IG_like 268..350 CDD:214653
C2-set_2 358..440 CDD:285423
I-set 460..555 CDD:254352
Ig 472..555 CDD:299845
Ig 563..646 CDD:299845 16/89 (18%)
IG_like 670..750 CDD:214653 22/113 (19%)
Ig 676..750 CDD:299845 21/107 (20%)
Ig_3 753..834 CDD:290638 22/84 (26%)
IG_like 762..848 CDD:214653 21/89 (24%)
Ig 848..956 CDD:299845 33/114 (29%)
IG_like 859..949 CDD:214653 29/96 (30%)
FN3 955..1049 CDD:238020 11/93 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1043..1067 4/23 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1113..1144
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11640
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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