DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment plum and robo2

DIOPT Version :9

Sequence 1:NP_001163744.1 Gene:plum / 43197 FlyBaseID:FBgn0039431 Length:1298 Species:Drosophila melanogaster
Sequence 2:NP_001259868.1 Gene:robo2 / 44522 FlyBaseID:FBgn0002543 Length:1519 Species:Drosophila melanogaster


Alignment Length:1377 Identity:263/1377 - (19%)
Similarity:439/1377 - (31%) Gaps:478/1377 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 QVSYRKND----------FFIYDNGTLRL-PTNEKASGEYYCKIE----WDESAVISDRITVEYP 156
            |:|:|||.          ..|.|.|.|.: ...:...|.|.|.::    ..|||....::.|. |
  Fly   220 QISWRKNGQTLNLVGNKRIRIVDGGNLAIQEARQSDDGRYQCVVKNVVGTRESATAFLKVHVR-P 283

  Fly   157 VLKRLFPGQQQAANISALENKPLVLSCPFLSVPAARFSWYFGNDSLTNDNSAL----ILTNGTLI 217
            .|.|   |.|   |.:|:....:|..|.....|.....|   ..:.:..|..|    :|.:.:|.
  Fly   284 FLIR---GPQ---NQTAVVGSSVVFQCRIGGDPLPDVLW---RRTASGGNMPLRRVHVLEDRSLK 339

  Fly   218 LRHLRLEQAGKYKCVAQNTFASKTHRQFIWQLQVEPKDATFYPKNE-AGITETAVSEAQ------ 275
            |..:.||..|:|.|.|.|.....| ...|..:...|| ....|||: ..|.:..:.|.|      
  Fly   340 LDDVTLEDMGEYTCEADNAVGGIT-ATGILTVHAPPK-FVIRPKNQLVEIGDEVLFECQANGHPR 402

  Fly   276 -------------LLPAFQNATVFV---PAGGSVLLQCHAVADFVPIVWYLQPPNNKMVRLSNNS 324
                         |||.:::..:.|   |.|.|||    ::|.|.      :..:.|:|..:..:
  Fly   403 PTLYWSVEGNSSLLLPGYRDGRMEVTLTPEGRSVL----SIARFA------REDSGKVVTCNALN 457

  Fly   325 VAYSITNASIARHEGRYSCITPLETQNFQVIVTTPPRIVSR------LPVEVVYIGLSRTLTCRA 383
            ...|:::.:          :..::|| |::    ||.|:.:      |||:.:.:     |.||.
  Fly   458 AVGSVSSRT----------VVSVDTQ-FEL----PPPIIEQGPVNQTLPVKSIVV-----LPCRT 502

  Fly   384 EGHPEPSITWYHNGVHL--------NSSYTRYISGNELHVHSFDSKEEGIYQCVARNVAGEDSAT 440
            .|.|.|.::||.:|:.:        |.|....::.::|..|    ::||:|.|||.|..|:.|.:
  Fly   503 LGTPVPQVSWYLDGIPIDVQEHERRNLSDAGALTISDLQRH----EDEGLYTCVASNRNGKSSWS 563

  Fly   441 GELRFNRQLEEVNPLQNIR--------CYP------------HSFHSINITFDSRTLTSMFVVYI 485
            |.||.:   ...||  ||:        .||            .:..:::.|..::...|..|.|:
  Fly   564 GYLRLD---TPTNP--NIKFFRAPELSTYPGPPGKPQMVEKGENSVTLSWTRSNKVGGSSLVGYV 623

  Fly   486 V----RNNPHSWTSFSPMKLNQTSYVVISTDLPVYEPFALITRVLFPTTEVRTGTLVPQQMILSS 546
            :    :|....|.:.. .::..|::..... ||....|.||      ..|...|..:|..|    
  Fly   624 IEMFGKNETDGWVAVG-TRVQNTTFTQTGL-LPGVNYFFLI------RAENSHGLSLPSPM---- 676

  Fly   547 LRSTPVTCCTQ----GLML---RPIAVGNDTFVKWSQGQLENKKYFILQFSINHTHPHPAQLLNG 604
              |.|:|..|:    ||.|   |...:..|. |:.|...:.:.....|.:          |::||
  Fly   677 --SEPITVGTRYFNSGLDLSEARASLLSGDV-VELSNASVVDSTSMKLTW----------QIING 728

  Fly   605 S-LQGTLTSVEEKADQVRHHLTEIQPLNQSAAATVLRNVEHEDNVVDDTLELEDDIFSLVVDASV 668
            . ::|......:..:.:         :|..|..|     .:.:.::..|        |....||.
  Fly   729 KYVEGFYVYARQLPNPI---------VNNPAPVT-----SNTNPLLGST--------STSASASA 771

  Fly   669 TGILLQRFTRIKMRVLIITTENEFLGQDFRYVQWKIIENGTSEQS--NMPFRLVTRESRALAFKF 731
            :...|            |:|:........|        :|.:.||  ..|..|.|:      ::.
  Fly   772 SASAL------------ISTKPNIAAAGKR--------DGETNQSGGGAPTPLNTK------YRM 810

  Fly   732 LDSLNETCVLECHTEIQAQMSLPSQDPKCQDRNIANSLLLVTGLKPDTRYNLHFYNCKTRIFYGD 796
            |..||......|                           .:|||...|.|......     ||..
  Fly   811 LTILNGGGASSC---------------------------TITGLVQYTLYEFFIVP-----FYKS 843

  Fly   797 IDEK--------TEQDPPGTI---SNSKLIKQNGLKLMWEPP---------INPNGRVHHYDIRW 841
            ::.|        |.:|.|...   ..:.|:..:.:.|.|:.|         :|.:..|...|...
  Fly   844 VEGKPSNSRIARTLEDVPSEAPYGMEALLLNSSAVFLKWKAPELKDRHGVLLNYHVIVRGIDTAH 908

  Fly   842 S----LDNVTHEAIVKECTKCSYKFPNVSETAKIHVAVRVMGDTGAG-----APMYFD------- 890
            :    |.|||.:|     ...:....|::|.....|.|....:.|.|     |.:..|       
  Fly   909 NFSRILTNVTIDA-----ASPTLVLANLTEGVMYTVGVAAGNNAGVGPYCVPATLRLDPITKRLD 968

  Fly   891 -MINNNHTWLKEESESSHSEVYSGIAIGSLLSIACVFLFGLFIIFQQRNFKARAQGPTHLTTPTD 954
             .||..:...::......::.:..|.:|::|:: .:..||..:..::::.               
  Fly   969 PFINQRYPINQDHVNDVLTQPWFIILLGAILAV-LMLSFGAMVFVKRKHM--------------- 1017

  Fly   955 INFGNLSSASGMPGDSAGGLSGGTLQQDCHEMQTLIPRSRYHIELLPEHSLEYQTSTAAVAVVHL 1019
                       |...||.....|....|..:|.:|..|                           
  Fly  1018 -----------MMKQSALNTMRGNHTSDVLKMPSLSAR--------------------------- 1044

  Fly  1020 ANGNG-------SVQVARRSDQDGAAQGD-LGIAGVHNLSQLPLCGVGGTSPERKTVQDAMLQEA 1076
             ||||       ...|.|.|     ..|| |.:...|.....|:||..|:               
  Fly  1045 -NGNGYWLDSSTGGMVWRPS-----PGGDSLEMQKDHIADYAPVCGAPGS--------------- 1088

  Fly  1077 KAFYIPYRHTPPNAVALSSSKQCAVPSGSELEVIVPPNSLPLVTTMPGLGVVGGGGSGG----GG 1137
                                     |:|..             |:..|.|..|.|.|||    ||
  Fly  1089 -------------------------PAGGG-------------TSSGGSGGAGSGASGGDDIHGG 1115

  Fly  1138 VGGSSRRS------GSLSSSSASSSSNGSSKKQFHTNFVRHSNSNDGIYLLAEEEAAATLTPTSE 1196
            .|....:.      .::.:..|..||.|.:..::.    ||.|::...|     ..::.|:|..:
  Fly  1116 HGSERNQQRYVGEYSNIPTDYAEVSSFGKAPSEYG----RHGNASPAPY-----ATSSILSPHQQ 1171

  Fly  1197 RE-------------YAAVCLTNGFKLP-----------ADVAKSGGGTYNTTNNNNS--STNTS 1235
            ::             |       |.:.|           ...|:.....:.....:..  .:|..
  Fly  1172 QQQQQPRYQQRPVPGY-------GLQRPMHPHYQQQQHQQQQAQQTHQQHQALQQHQQLPPSNIY 1229

  Fly  1236 QKSATAKERQPRGNGNPISFSHNACKVPANGPASVNVNHSS-----------AVKQSWPA----A 1285
            |:.:|..|..|...|...|........|.:....:::..:.           ..|||.|.    |
  Fly  1230 QQMSTTSEIYPTNTGPSRSVYSEQYYYPKDKQRHIHITENKLSNCHTYEAAPGAKQSSPISSQFA 1294

  Fly  1286 TVVHRRAQVDPN 1297
            :|  ||.|:.||
  Fly  1295 SV--RRQQLPPN 1304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
plumNP_001163744.1 IG_like 170..241 CDD:214653 18/74 (24%)
IGc2 175..235 CDD:197706 15/63 (24%)
IG_like 284..356 CDD:214653 14/74 (19%)
I-set 360..443 CDD:254352 28/96 (29%)
IGc2 378..435 CDD:197706 20/64 (31%)
FN3 804..886 CDD:238020 20/102 (20%)
robo2NP_001259868.1 Ig1_Robo 90..185 CDD:143317
I-set 91..184 CDD:254352
I-set 190..279 CDD:254352 15/58 (26%)
Ig2_Robo 193..279 CDD:143201 15/58 (26%)
I-set 283..370 CDD:254352 25/96 (26%)
Ig 300..370 CDD:299845 18/73 (25%)
Ig 388..>457 CDD:299845 15/78 (19%)
I-set 479..561 CDD:254352 25/90 (28%)
Ig 496..561 CDD:143165 21/73 (29%)
FN3 588..681 CDD:238020 19/106 (18%)
FN3 <817..856 CDD:238020 9/70 (13%)
fn3 864..952 CDD:278470 18/92 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452283
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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