DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment plum and sns

DIOPT Version :9

Sequence 1:NP_001163744.1 Gene:plum / 43197 FlyBaseID:FBgn0039431 Length:1298 Species:Drosophila melanogaster
Sequence 2:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster


Alignment Length:1500 Identity:286/1500 - (19%)
Similarity:497/1500 - (33%) Gaps:440/1500 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 IYDNGTLRLPTNEKASGEYYCKI---EWDESAVISDRITVEYPVLKRLFPGQQQAANISALENKP 178
            ||:........|:.|  :|.|::   ..:.:...:.::||..|.......|....:.:...||:.
  Fly   133 IYNLRISNASINDDA--DYQCQVGPARLNSAIRANAKLTVISPPASIEIKGYSHNSKVEVRENQD 195

  Fly   179 LVLSCPFLSV-PAARFSWYFGN---------DSLTNDNSALILTNGTLILRHLRLEQAGKYKCVA 233
            |.|.|...:. |||:..||.||         |::....:....|..:|.|:....:...:|.|.|
  Fly   196 LQLKCIVANAKPAAQIVWYRGNVEYKPEKREDTVEESTAKRFTTTSSLKLKPGPDDDYTEYTCQA 260

  Fly   234 QNT----------------------------FASKTHR------------------QFIW----- 247
            ::.                            .|.:|.|                  |.||     
  Fly   261 RHKALSPDMPMRATVQLSVLYPPGPPYIEGYSAGETLRRGQTVELMCRSRGGNPPAQLIWYKNGS 325

  Fly   248 QLQVEPKDATFYPKN------EAGITE--------TAVSEAQLLPAFQNATVFVPAGGSVLLQCH 298
            |:::..:.:....:|      |||..:        ..:|:..|....:.:.:|.|...:|:....
  Fly   326 QIRMAYRTSGRLSENIYTFTAEAGDNKARFRCEASNVMSQNPLKAEVELSVLFAPTHVTVMGPTE 390

  Fly   299 A-VADFVPIVWYLQPPN----------NKMVRLSNNSVAYS-------ITNASIARHEGRYSCIT 345
            | |.|.||:.....|.|          .:.||.:.:....|       .:|.:......:.|.:.
  Fly   391 ARVGDIVPLTCTTAPSNPPAEIKWMVGGRQVRNATSKTIVSPEGGWTTTSNITAVVEPNKRSLVV 455

  Fly   346 PLETQNFQV---IVTT----------PPRIVSRLPVEVVYIGLSRTLTC-RAEGHPEPSITWYHN 396
            .....|.|:   :|:|          ||.|...:..:::..|..:.|.| .:.|:|..::|||.|
  Fly   456 ICHGLNMQLTENVVSTHTINVLYPPAPPLISGYMEGQIIPAGSVQKLLCVSSGGNPLATLTWYKN 520

  Fly   397 GVHLNS---SYTRYISGNELHVHSFDSKEEGIYQCVARNVAGE----DSATGELRFNRQL----- 449
            ...:||   :..:.:|. |:.:.:..|..:..|:|.|.|.|.|    .|.|..:.|..:.     
  Fly   521 DKRINSVIRAADKSVSA-EITILANVSDNQAQYRCEASNSATEIPLFQSTTLSVHFAPETVKIRI 584

  Fly   450 --EEVNP--LQNIRCYPHS---------------FHSINIT-----FDSRTLTSMFVVYIVRN-N 489
              ||:.|  ...|.|...|               ...||.|     :.....|..|.|.:.:. |
  Fly   585 EPEELRPGMEATIICDSSSSNPPAKLSWWKDGIPIEGINNTSKPGLWGGTVSTLEFRVNVTQEMN 649

  Fly   490 PHSWTSFSPMK-LNQTSYVVISTDLPVYEPFALITRVLFPTTEVRTGTLVPQQMILSSLRS---- 549
            ...:|..|..: |.::::..:|.|: :|.|     :.:.|.:....|  |..:.:..||::    
  Fly   650 GQVYTCQSANEALQRSAHEAVSLDV-LYRP-----KFVPPPSSTAVG--VEGESLQVSLQTRANP 706

  Fly   550 TPVTCCTQGLMLRPIAVGNDTFVKWSQG-----QLENKKYFILQFSINHTHPH---------PAQ 600
            ||||                  .||::.     |..:.:.|....|:|.|..|         .|.
  Fly   707 TPVT------------------YKWTKDGTTIPQDGDHRIFADGGSLNFTRLHRDDAGIYSCSAS 753

  Fly   601 LLNGSLQGTLTSVEEKADQVRHHLTEIQPLNQSAAATVLRNVEHEDNVVDDTLELEDDIFSLVVD 665
            ...|.....:|.|.|....:: .::|...:|....|.:...||.:. :.::.::.|...:.:.|.
  Fly   754 NSQGGATLNITVVVEYGTTIK-SVSENIVVNPGEDAMLSCTVEGKP-LTEEHVKWERVGYDMTVK 816

  Fly   666 ASVTGILLQRFTRIKMRVLIITTENEFLGQDFRYVQWKIIENGTSEQSNMPFRLVTRESRALA-- 728
            .|.|......:..||      ..:.|.:| :||.|....::|.|    |....|:.:.:..:|  
  Fly   817 TSTTFANGTSYLHIK------DAKREDVG-NFRCVADNRVDNPT----NRDILLIVKFAPEIAKT 870

  Fly   729 ---FKFLDSLNETCVLECHTE---------IQAQMSLP---SQDPKCQDRNIAN----SLLLVTG 774
               .:......|...|.|..:         .|.:..||   :...:.::|.|.:    |.|:|..
  Fly   871 PTLLRAASGTGERGRLPCRAQGSPKPQFIWRQDKKDLPINRTYKYEVEERKIDSLTYESTLIVDK 935

  Fly   775 LKPDTRYNLHFYNCKTRIFYGD------IDEKTEQDPPGTISNSKLIKQNGLKLMWEPPINPNGR 833
            :.| ..|..  |.|..|...|:      ::..::.|||.:: |...:..:.:.|.|.|..: .|.
  Fly   936 VAP-ADYGA--YECVARNELGEAVETVRLEITSQPDPPLSL-NILNVTHDTVTLAWTPGFD-GGL 995

  Fly   834 VHHYDIRWSLDNVTHEAIVKECTKCSYKF----PNVSETAKIHVA---------VRVMGDTGAGA 885
            ...|.:|:.:           ..:..||:    ||   :.|:.:.         ..||.....|.
  Fly   996 KASYRVRYRM-----------ADREQYKYIDGLPN---SHKLTIGGLRMNTLYLFSVMSWNELGQ 1046

  Fly   886 PMYFDMINNNHTWLKEESESSH------------SEVYSGIAIGSLL----SIACVFLFGLFII- 933
            ..|...:....|  ||....||            |:...|...|.||    :...|.|..:|:| 
  Fly  1047 SSYLPDLARAET--KEAPPPSHPASSLGGGPPTTSQTPLGGTSGMLLVGVGAGIVVVLLNVFVIG 1109

  Fly   934 --FQQRNFKARAQG----PTHLT-----TPTDINFGNLSSASGM--------------------- 966
              ..:||.|...:|    |..||     ||..:..|...:|.|.                     
  Fly  1110 CCLHKRNEKRLKRGLELMPAELTEDSSNTPNLVIIGISLAAFGFLLVNASLVAWFFVHQRRKKVA 1174

  Fly   967 ----------------PGDSAGGLSGGTLQQDCHEMQTLIPRSRYHIE--LLPEHSLEYQTSTAA 1013
                            |......::|.||.....:.::      |..|  ..||:..|.:...|:
  Fly  1175 ETTNQPAKTATIEMYAPSSYNDTVTGETLSSVSEKSES------YSNEGSSQPEYIDEVRKKAAS 1233

  Fly  1014 VAVVHLANGNGSVQVARRSDQDGAAQGDLGIAGVHNLSQLPLCGV------GGTSPERKTVQDAM 1072
            ..:|     .||.....|..:||.    |.:...:|:  :..|.:      .|::....|..|.|
  Fly  1234 TYLV-----EGSDMPPPRYQKDGT----LPVIYPNNV--VNACTLPHPRHNNGSAAIHMTRDDQM 1287

  Fly  1073 LQEAKAFYIPYRH--TPPNA--VALSSSKQCAVPS---GSELEVIVPPNSLPLVTTMP------- 1123
            | .:|..|||...  .||:.  ..::|.:..:.|.   .:.|:....|  :|:....|       
  Fly  1288 L-ISKGVYIPSPSPAPPPDGSYYNMNSDRYLSYPPMEYPAALDFTAQP--MPMAHLQPMTVTSLA 1349

  Fly  1124 ---GLGVVGGGGSGGGGVGGSSRRSGSLSS---------SSASSSSNGSSKKQFHTNFVRHSNSN 1176
               |..::|.|.......|..:.|.|.|..         :..:|:..||..:..|.         
  Fly  1350 TNGGPTLIGNGSVAAVAGGSGTLRRGILRGVVGVPQPDVTHHTSTVGGSPMQMLHD--------- 1405

  Fly  1177 DGIYLLAEEEAAATLTPTSEREYAAVCLTNGFKLP---ADVAKSGGGTYNTTNNNNSSTNTSQKS 1238
                |.....:|:|||.::        ..|| .||   |.:.:...|.....|.|.......|:.
  Fly  1406 ----LHPVNLSASTLTTST--------TLNG-SLPTATATLPRQPHGILKDPNRNKQQQQQQQQQ 1457

  Fly  1239 ATAKERQPR---------GNGNPISFSHNACKV----PANG--------------PASVNVNHSS 1276
            ...::.|.:         |.|.|:|....:.::    ||:|              |.:|.::...
  Fly  1458 QQQQQLQHQQQLLNASLVGVGVPVSAPLGSLQILNLPPASGGLGNNLLMTTNAFDPTTVGLSSFG 1522

  Fly  1277 AVKQS 1281
            ||.|:
  Fly  1523 AVSQA 1527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
plumNP_001163744.1 IG_like 170..241 CDD:214653 20/108 (19%)
IGc2 175..235 CDD:197706 19/69 (28%)
IG_like 284..356 CDD:214653 17/92 (18%)
I-set 360..443 CDD:254352 24/90 (27%)
IGc2 378..435 CDD:197706 17/60 (28%)
FN3 804..886 CDD:238020 18/94 (19%)
snsNP_001036532.1 I-set 73..170 CDD:254352 6/38 (16%)
Ig 76..155 CDD:299845 6/23 (26%)
IG_like 186..279 CDD:214653 19/92 (21%)
Ig 197..279 CDD:299845 16/81 (20%)
IG_like 296..376 CDD:214653 12/79 (15%)
Ig 300..361 CDD:299845 8/60 (13%)
Ig 380..454 CDD:299845 14/73 (19%)
IG_like 490..573 CDD:214653 22/83 (27%)
Ig 501..560 CDD:299845 17/59 (29%)
Ig 584..666 CDD:299845 16/81 (20%)
IG_like 585..666 CDD:214653 16/80 (20%)
I-set 678..767 CDD:254352 21/113 (19%)
IGc2 692..757 CDD:197706 15/82 (18%)
Ig 788..849 CDD:143165 14/68 (21%)
Ig 885..960 CDD:143165 16/77 (21%)
FN3 967..1051 CDD:238020 19/99 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11640
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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