DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment plum and fred

DIOPT Version :9

Sequence 1:NP_001163744.1 Gene:plum / 43197 FlyBaseID:FBgn0039431 Length:1298 Species:Drosophila melanogaster
Sequence 2:NP_608812.3 Gene:fred / 33613 FlyBaseID:FBgn0051774 Length:1447 Species:Drosophila melanogaster


Alignment Length:1500 Identity:252/1500 - (16%)
Similarity:434/1500 - (28%) Gaps:563/1500 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 HSPYY------LPCIPILTPYN----HDQDNQPIYCS-----------WYRNDVVVEQVSY---- 110
            |..:|      .|..|::||.|    .::....:.||           |||....|...||    
  Fly   117 HQEFYNLTVLTAPHPPMVTPGNLAVATEEKPLELTCSSIGGSPDPMITWYREGSTVPLQSYALKG 181

  Fly   111 -RKNDFFIYDNGTLRLPTNEKASGEYYCKIEWD----ESAVISDRITVEYPVLKRLFPGQQQAAN 170
             .||.   |.|.||::.......|..|..:.|:    |..::...:|:......|:..|.|....
  Fly   182 GSKNH---YTNATLQIVPRRADDGAKYKCVVWNRAMPEGHMLETSVTLNVNYYPRVEVGPQNPLK 243

  Fly   171 IS---------ALENKPLVLSCPFLSVPAARFSWYFGNDSLTNDNSALILTNGTLILRHLRLEQA 226
            :.         .::.||:|          :...|        :.|...:....|..:..:....|
  Fly   244 VERDHVAKLDCRVDAKPMV----------SNVRW--------SRNGQYVSATPTHTIYRVNRHHA 290

  Fly   227 GKYKCVAQNTFASKTHRQFIWQLQVEPKDATFYPKNEAGITETAVSEAQLLPAFQNATVFVPAGG 291
            |||.|.|.|.......:..:..:        .||  .....|:...||:             .|.
  Fly   291 GKYTCSADNGLGKTGEKDIVLDV--------LYP--PIVFIESKTHEAE-------------EGE 332

  Fly   292 SVLLQCHAVADFVPI------------------------------------VWYLQPPNNKMVR- 319
            :||::|:..|:..||                                    |..:||.::|.|. 
  Fly   333 TVLIRCNVTANPSPINVEWLKEGAPDFRYTGELLTLGSVRAEHAGNYICRSVNIMQPFSSKRVEG 397

  Fly   320 LSNNSVA---------------------------------------------------------- 326
            :.|::||                                                          
  Fly   398 VGNSTVALLVRHRPGQAYITPNKPVVHVGNGVTLTCSANPPGWPVPQYRWFRDMDGDIGNTQKIL 462

  Fly   327 -----YSITNASIARHEGRYSC--ITPLETQNFQVI---VTTPPRIVSRLPVEVV-YIG-LSRTL 379
                 |||..|.:. .||:|.|  :..|.......|   |..||:.:::|...:. .:| :...:
  Fly   463 AQGPQYSIPKAHLG-SEGKYHCHAVNELGIGKIATIILEVHQPPQFLAKLQQHMTRRVGDVDYAV 526

  Fly   380 TCRAEGHPEPSITWYHNGVHLNSSYTRY--------ISGNELHVHS---FDSK-----------E 422
            ||.|:|.|.|.|.|..:|..:..:...:        ..|..:.|.|   |..|           :
  Fly   527 TCSAKGKPTPQIRWIKDGTEILPTRKMFDIRTTPTDAGGGVVAVQSILRFRGKARPNGNQLLPND 591

  Fly   423 EGIYQCVARNVAGEDSATGELRFNRQLEEVNPLQNIRCYPHSFHSIN-ITFDSRTLTSMFVVYIV 486
            .|:|.|:..|.....:::..||...:             |...|..| :.:|.|  .|..||..|
  Fly   592 RGLYTCLYENDVNSANSSMHLRIEHE-------------PIVIHQYNKVAYDLR--ESAEVVCRV 641

  Fly   487 R------------NNPHSWTSFSPMKLNQTSYVVISTDLPVYEPFALITRVLF----PTTEVRTG 535
            :            |||      ||:.::...:..|||.:...:.:..|.|:..    ...|....
  Fly   642 QAYPKPEFQWQYGNNP------SPLTMSSDGHYEISTRMENNDVYTSILRIAHLQHSDYGEYICR 700

  Fly   536 TLVPQQMILSSLRSTPVTCCTQGLMLRPIAVG-NDTFVKWS---QGQLENKKYFILQFSINHTHP 596
            .:.|...|.:.:|..|.....:...|:.:.|| |...:.|:   .|...:.||.:....:  ..|
  Fly   701 AVNPLDSIRAPIRLQPKGSPEKPTNLKILEVGHNYAVLNWTPGFNGGFMSTKYLVSYRRV--ATP 763

  Fly   597 HPAQLLNGSLQGTLTSVEEKA-------------------------DQVRHHLTEIQPLNQSAAA 636
            ....|.:.|..|.:.|.:..:                         ||.:.::.::..||....:
  Fly   764 REQTLSDCSGNGYIPSYQISSSSSNSNHEWIEFNCFKENPCKLAPLDQHQSYMFKVYALNSKGTS 828

  Fly   637 TVLRNVEHEDNV--VDDTLELEDDIFSLVVDASVTGILLQRFTRIKMRVLIITTENEFLGQDFRY 699
            .....:.....|  :...|.:..|..|.|:..:|....|.          :|......:.:|...
  Fly   829 GYSNEILATTKVSKIPPPLHVSYDPNSHVLGINVAATCLS----------LIAVVESLVTRDATV 883

  Fly   700 VQWKIIENGTSEQSNMPFRLVTRESRALAFKFLDSLNETCVLEC---HTEIQAQMSLPSQDPKC- 760
            ..|:|:|..|                     .|.|.:||...|.   |....|..:..:...:. 
  Fly   884 PMWEIVETLT---------------------LLPSGSETTFKEAIINHVSRPAHYTTATTSGRSL 927

  Fly   761 ---------QDRNIANSLLLVTGLKPDTRYNLHFYNCKTRIFYGDIDEKTEQDPPGTISNSKLIK 816
                     :||.:|                                 ..|...||.:...||  
  Fly   928 GVGGGSHLGEDRTMA---------------------------------LAETAGPGPVVRVKL-- 957

  Fly   817 QNGLKLMWEPPINPNGRVHHYDIRWSLDNVTHEAIVKECTKCSYKFPNVSETAKIHVAVRVMGDT 881
                                                  |.:.:::.......|:|          
  Fly   958 --------------------------------------CLRSNHEHCGAYANAEI---------- 974

  Fly   882 GAGAPMYFDMINNNHTWLKEESESSHSEVYSGIAIGSLLSIACVFLFGLFIIF--QQRNFKARAQ 944
                         ..:::..:|..:.|.:.:.|    :.|::.|...||...|  .:|...|:.:
  Fly   975 -------------GKSYMPHKSSMTTSALVAII----IASLSFVVFLGLLYAFCHCRRKHAAKKE 1022

  Fly   945 GPTHLTTPTDINFGNLSSASGMPGDSAGGLSGGTLQQDCHEMQTLIPRSRYHIEL----LPEHSL 1005
                            ||:.|      ||:.||......:...|  ....|.::|    .|..|.
  Fly  1023 ----------------SSSVG------GGVGGGNANATANPGST--GAKEYDLDLDASRRPSLSQ 1063

  Fly  1006 EYQTS------------TAAVAVVHLANGNGSVQVARRSDQD----------------GAAQGDL 1042
            :.|.|            |..:....:.||||.:::...:..|                |..|...
  Fly  1064 DPQQSQQQPPPPPPYYPTGTLDSKDIGNGNGGMELTLTALHDPDEQLNMQQQQHHSNHGQYQQPK 1128

  Fly  1043 GIAGVHNLSQLPLCGVGGTSPERKTVQDAMLQEAKAFYIP----YRHTPPNAVALSSSKQCAVPS 1103
            .|.|::.       ||.|:.......|.           |    |.:...:|:.:.|.....:||
  Fly  1129 AILGIYG-------GVAGSGGNNSGGQH-----------PHSNGYGYHVTSAIGVDSDSYQVLPS 1175

  Fly  1104 GSELEV------------IVPPNSLPLVTTMPGLGVVGGGGSGGGGVGGSSRRSGSLS------S 1150
            .:....            :....|.||..|.|... :.||.|...|:....::..:.:      :
  Fly  1176 VANSAAGSHGHGSGHGHGLGAGESGPLEATPPTCN-ISGGSSSNSGINPMQQQHSARANLTNQPT 1239

  Fly  1151 SSASSSSNGSSKKQFHTNFVRHSNSNDGIYLL---------AEEE--------------AAATLT 1192
            .:.:||:|..:....:||....:|:.:....|         .|.|              .|.|:|
  Fly  1240 IATASSTNNYNNHLNNTNIAHTTNNTNNCTTLKRGHLGNRERERERCQVTAATAATTTALATTIT 1304

  Fly  1193 PTSEREYAAVCLTNGFKLPADVAKSGGGTYNTTNNNNSSTNTSQKS------ATAKERQPRGNGN 1251
            .||....||...|.       :|.:|..:.:..||.:::.:.||::      |||:.:|......
  Fly  1305 TTSRNAKAATTTTT-------LAITGSSSNSNENNYSNARDLSQEALWRLQMATAQSQQIYVERP 1362

  Fly  1252 PISFS 1256
            |.:||
  Fly  1363 PSAFS 1367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
plumNP_001163744.1 IG_like 170..241 CDD:214653 13/79 (16%)
IGc2 175..235 CDD:197706 12/59 (20%)
IG_like 284..356 CDD:214653 25/176 (14%)
I-set 360..443 CDD:254352 21/106 (20%)
IGc2 378..435 CDD:197706 18/78 (23%)
FN3 804..886 CDD:238020 7/81 (9%)
fredNP_608812.3 Ig 29..126 CDD:299845 2/8 (25%)
IG_like 141..228 CDD:214653 19/89 (21%)
Ig 147..228 CDD:299845 19/83 (23%)
I-set 232..313 CDD:254352 16/98 (16%)
IGc2 250..302 CDD:197706 13/69 (19%)
IG_like 323..385 CDD:214653 9/74 (12%)
IGc2 330..385 CDD:197706 7/54 (13%)
Ig_2 416..501 CDD:290606 10/85 (12%)
IG_like 418..501 CDD:214653 10/83 (12%)
I-set 505..612 CDD:254352 21/106 (20%)
Ig 526..611 CDD:143165 18/84 (21%)
IG_like 633..715 CDD:214653 18/87 (21%)
Ig 635..713 CDD:143165 16/83 (19%)
FN3 720..838 CDD:238020 17/119 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11640
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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