DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment plum and robo3

DIOPT Version :9

Sequence 1:NP_001163744.1 Gene:plum / 43197 FlyBaseID:FBgn0039431 Length:1298 Species:Drosophila melanogaster
Sequence 2:NP_608592.2 Gene:robo3 / 33314 FlyBaseID:FBgn0041097 Length:1342 Species:Drosophila melanogaster


Alignment Length:1479 Identity:288/1479 - (19%)
Similarity:460/1479 - (31%) Gaps:551/1479 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 QIQKHAVTRLTISKPHSPYYLPCIPILTPYNHDQDNQPIYCSWYRNDVVVEQV--SYRKNDFFIY 118
            :|.:|.:.  |....|.|..|.|....:|....|        ||::.|.::.:  |:|       
  Fly    24 RIVEHPID--TTVPRHEPATLNCKAEGSPTPTIQ--------WYKDGVPLKILPGSHR------- 71

  Fly   119 DNGTLRLPT------------NEKASGEYYCKIEWDESAVISDRITVEYPVLKRLFPGQQQAANI 171
                :.||.            .|..:|.|:|:.:.:.....|...|::..||:..|..:.|...|
  Fly    72 ----ITLPAGGLFFLKVVNSRRETDAGIYWCEAKNELGVARSRNATLQVAVLRDEFRLEPQNTRI 132

  Fly   172 SALENKPLVLSCPFLSVPAARFSWYFGNDSLTNDNS--ALILTNGTLILRHLRLEQAGKYKCVAQ 234
            :..:...|..:.| ..:|....:|..|...|..:.|  ..|:..|.|.::..|....|:|:|:|:
  Fly   133 AQGDTALLECAAP-RGIPEPTVTWKKGGQKLDLEGSKRVRIVDGGNLAIQDARQTDEGQYQCIAK 196

  Fly   235 NTFASKTHRQFIWQLQVEP--------------KDATF----------------------YPKNE 263
            |....:.......::.|:|              ...||                      .|.:.
  Fly   197 NPVGVRESSLATLKVHVKPYIIRGPHDQTVLEGASVTFPCRVGGDPMPDVLWLRTASGGNMPLDR 261

  Fly   264 AGITE---------TAVSEAQ----------LLPAFQNATVFVP-------------AGGSVLLQ 296
            ..:.|         |...|.:          .:.|....||:.|             .|.....:
  Fly   262 VSVLEDRSLRLERVTIADEGEYSCEADNVVGAITAMGTLTVYAPPKFIQRPASKSVELGADTSFE 326

  Fly   297 CHAVADFVP-IVWYLQ----------PP------------------------NNKMVRLSN--NS 324
            |.|:.:..| |.|.::          ||                        :..:|.|.|  |.
  Fly   327 CRAIGNPKPTIFWTIKNNSTLIFPGAPPLDRFHSLNTEEGHSILTLTRFQRTDKDLVILCNAMNE 391

  Fly   325 VAYSITN---ASIARHEGRYSCITPLETQNFQVIVTTPPRIVSRLPV-EVVYIGLSRTLTCRAEG 385
            || |||:   .|:...|.|                  ||.|:...|| :.:.|....||.|:|.|
  Fly   392 VA-SITSRVQLSLDSQEDR------------------PPPIIISGPVNQTLPIKSLATLQCKAIG 437

  Fly   386 HPEPSITWYHNGVHLN-SSYTRYISGNELHVHSFD-SKEEGIYQCVARNVAGEDSATGELRFNRQ 448
            .|.|:|:||.:|:.:. ||.....:..:|.:...| .:::|:|.|||.:.||:.:.:|.||... 
  Fly   438 LPSPTISWYRDGIPVQPSSKLNITTSGDLIISDLDRQQDQGLYTCVASSRAGKSTWSGFLRIEL- 501

  Fly   449 LEEVNPLQNIRCY-----------PHSFHSINITFDSRTLTSMFVVYIVRNNPHSWTSFSPMKLN 502
              ..||  ||:.|           |.....:|.|..:.|:.              |.:..  |..
  Fly   502 --PTNP--NIKFYRAPEQTKCPSAPGQPKILNATASALTIV--------------WPTSD--KAG 546

  Fly   503 QTSYVVISTDLPVYEPFALITRVLFPTTEVRTGTLVPQQMILSSLRSTP---VTCCTQGLMLRPI 564
            .:|::..|.:             ::.|.:.|  |.:|    ::|..|.|   |...|||.....|
  Fly   547 ASSFLGYSVE-------------MYCTNQSR--TWIP----IASRLSEPIFTVESLTQGAAYMFI 592

  Fly   565 AVGNDTFVKWSQGQLENKKYFILQFSINHTHPHPAQLLNGSLQGTLTSVEEKADQVRHHLTEIQP 629
            .            :.||.    |.||      .|:.:......|.|..|.:.::.     |....
  Fly   593 V------------RAENS----LGFS------PPSPISEPITAGKLVGVRDGSES-----TGTSQ 630

  Fly   630 LNQSAAATVLRNVEHEDNVVDDTLELEDDIFSLVVDASVTGILLQRFTRIKMRVLIITTENEFLG 694
            |..|...|:|:        .:|.:||      |..:||.:                 ||..    
  Fly   631 LLLSDVETLLQ--------ANDVVEL------LEANASDS-----------------TTAR---- 660

  Fly   695 QDFRYVQWKIIENGTSEQSNMPFRLVTRESRALAFKFLDSLNETCVLECHTEIQAQMSLPSQDPK 759
                 :.|.|    .|.|....|.|..||..:..:|.:..||:...|...|              
  Fly   661 -----LSWDI----DSGQYIEGFYLYARELHSSEYKMVTLLNKGQGLSSCT-------------- 702

  Fly   760 CQDRNIANSLLLVTGLKPDTRYNLHFYNCKTRIFYGDIDEKTEQDPPGTISNSKLIK-------- 816
                        |.||...:.|......     ||..|        .|..|||:.::        
  Fly   703 ------------VPGLAKASTYEFFLVP-----FYKSI--------VGKPSNSRRMRTLEDVPEA 742

  Fly   817 -----------QNGLKLMWEPPINP----NGRVHHYDI---------------RWSLD------- 844
                       :..:.|.|.|| .|    ||.:..|::               ..::|       
  Fly   743 PPYGMEAIQFNRTSVFLKWLPP-QPNRTRNGILTSYNVVVKGLDVHNTTRIFKNMTIDAAAPTLL 806

  Fly   845 ------NVTHEAIVKECTKCSYKFPNVSETAKIHVAVRVMG-DTG-AGAPMYFDMINN--NHTWL 899
                  .||:...|...|:..  ....|:.|.:.:..|... ||| ...|:..|:.::  ..||.
  Fly   807 LANLTTGVTYYIAVAAATRVG--VGPFSKPAVLRIDARTQSLDTGYTRYPISRDIADDFLTQTWF 869

  Fly   900 KEESESSHSEVYSGIAIGSLLSIACVFLFGLFIIFQQRNF-KARAQGPTH----LTT----PT-D 954
            .             :.:||:::| .|||.|..::|::..| |..:.|..|    :.|    || .
  Fly   870 I-------------VLLGSIIAI-IVFLLGALVLFKRYQFIKQTSLGSLHGNHAIGTVRKFPTLP 920

  Fly   955 INFGNLSSASGMPGDSAGGLSGGTLQQDCHEMQTLIPRSRYHIELLPEHSLEYQTSTAAVAVVHL 1019
            :|.|....|.|....:|.|.||..|..|        |.|                     .|...
  Fly   921 LNGGGAVGAGGSNSTAAAGQSGHGLWID--------PTS---------------------GVWRQ 956

  Fly  1020 ANGNGSVQVARRSDQDGAAQGDLGIAGVHNLSQLPLCGVGGTSPERKTVQDAMLQEAKAFYIPYR 1084
            |.|.|:..               |:.......|||  |....:.::.. |..:|.:.:      |
  Fly   957 AAGGGNPG---------------GVGSCTTKEQLP--GYAQATAQQGQ-QPTLLPDYE------R 997

  Fly  1085 HTPPN-----AVALSSSKQCAVPSGSELEVIVPPNSLPLVTTMPGLGVVGGGGSGGGGVGGSSRR 1144
            .:|.|     .||.|:.|.             |.:..|         .:||||.|         :
  Fly   998 LSPLNMPDYAEVACSTFKS-------------PTHGAP---------PMGGGGGG---------Q 1031

  Fly  1145 SGSL-SSSSASSSSNGSSKKQFHTNFVRH---------SNSND---------GIYLLAEEEAAAT 1190
            |.|| .|..|.:::|..:..:.:.|  |:         ||:|:         |:|..........
  Fly  1032 SASLYDSCGAYATTNVVANVKLYQN--RYATKPNQSSGSNNNNHQGNDYQSTGMYSAPPSAHYGC 1094

  Fly  1191 LTPTSEREY-----------AAVCLTNGFKLPADVAKSGGGTYNTTNNNNSSTNTSQKSATAKER 1244
            |.|..:::.           :...|||.   ||.|.|     .|.|.|     ...|....::..
  Fly  1095 LEPKQQQQQQQPNLMTTSTASTAILTNS---PAKVKK-----INITEN-----KMDQLEGKSERT 1146

  Fly  1245 QPRGNGNPISFSHNACKVPANGPASVNVNHSSAVKQSWPAATVVHRRAQ 1293
            .|......:..:.||.|......|:..:   :|...|...|..:.|:.|
  Fly  1147 NPFNQQQQLLLASNALKQGLGAYANTTL---AAQMASGGGAGTLRRQRQ 1192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
plumNP_001163744.1 IG_like 170..241 CDD:214653 17/72 (24%)
IGc2 175..235 CDD:197706 15/61 (25%)
IG_like 284..356 CDD:214653 23/124 (19%)
I-set 360..443 CDD:254352 28/85 (33%)
IGc2 378..435 CDD:197706 20/58 (34%)
FN3 804..886 CDD:238020 23/134 (17%)
robo3NP_608592.2 Ig 22..117 CDD:299845 22/113 (19%)
I-set 23..116 CDD:254352 22/112 (20%)
I-set 122..211 CDD:254352 19/89 (21%)
Ig 125..211 CDD:299845 18/86 (21%)
I-set 215..302 CDD:254352 8/86 (9%)
Ig 232..302 CDD:299845 7/69 (10%)
I-set 306..401 CDD:254352 17/95 (18%)
Ig 320..411 CDD:299845 20/109 (18%)
I-set 412..492 CDD:254352 26/79 (33%)
IGc2 429..489 CDD:197706 20/59 (34%)
FN3 519..612 CDD:238020 26/149 (17%)
FN3 644..735 CDD:238020 32/165 (19%)
fn3 743..832 CDD:278470 13/91 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45452284
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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