DRSC/TRiP Functional Genomics Resources

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Protein Alignment plum and syg-2

DIOPT Version :9

Sequence 1:NP_001163744.1 Gene:plum / 43197 FlyBaseID:FBgn0039431 Length:1298 Species:Drosophila melanogaster
Sequence 2:NP_001309674.1 Gene:syg-2 / 181561 WormBaseID:WBGene00007750 Length:1230 Species:Caenorhabditis elegans


Alignment Length:859 Identity:160/859 - (18%)
Similarity:272/859 - (31%) Gaps:292/859 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RRLFVIQLIEILLLLLTDHNGRLTLTKESTTVAAAVAQPKNSTALQPYLQIQKHAVTRLTISKPH 71
            :|.||::...:....::.|:..|::......|......|:.|:|.|..::|         |:.|.
 Worm   377 QREFVVENGIVSSSNVSVHSNELSVEAHQINVECMATNPEGSSAKQHVIKI---------IAPPK 432

  Fly    72 SPYYLPCIPILTP------YNHD--------QDNQPI-YCSWYRND----------VVVEQVSYR 111
            :       ||:|.      :..|        |...|: ..||||..          :...||:..
 Worm   433 A-------PIITGLEDRKFFEGDIVNVTCEAQGGNPLAELSWYRGSEKHLVKGRKKMKWSQVNGA 490

  Fly   112 KND---FFIYDNGTLRLPTNEKASGEYYCKIE-----WDESAVISDRITVEYPVLKRLFPGQQQA 168
            .|:   |..|....||:   ::.......|.|     .||..:.|..::|.||. :|:......:
 Worm   491 HNEVAGFSSYSTLALRV---DRTMNTQRLKCEATNAALDEPLIESQYLSVYYPP-RRVLIRPADS 551

  Fly   169 ANISALENKPLVLSCPFLSV-PAARFSWYF-----------GNDSL---TNDN-----SALILT- 212
            .:...|..|...|.|..||. |||..||.|           |:.||   |.||     :.|..| 
 Worm   552 GDQRLLVGKSARLVCGTLSSNPAAHISWQFSRATDDNKVHLGDVSLNETTRDNGFNVENVLSFTP 616

  Fly   213 ----NGTLI--------LRH-----------------------LRLEQAGKYKCVAQNTFASKTH 242
                :||::        .:|                       :.:.:...:|   :|.......
 Worm   617 TEEYDGTVVHCIANHPEWKHSVNTSFPLNVMYPPKMLVNDPVTVVMSEGDSFK---ENLTVRGNP 678

  Fly   243 RQFIWQ------------------------LQVEPKDATFY---PKNEAGIT----ETAVSEAQL 276
            ...:||                        .|:...||..|   ..|..|.|    :.||..:..
 Worm   679 AISLWQWRKNGVPFDHTIGRVFARGAVLSGKQLLSTDAGVYTLTATNSVGSTNITIKLAVEYSAR 743

  Fly   277 LPAFQNATVFVPAGGSVLLQCHAVADFVP-----IVWYLQPPNNKMVRLSNNSVAYSITNASIAR 336
            :.:. :..|....|.:|||:|.  ||..|     |.||   .|.:::...:.....:|...:...
 Worm   744 ITSI-STPVIAATGDTVLLECE--ADGEPSKANMIHWY---KNGEILAAQHRGHKKAILRLNATE 802

  Fly   337 HE-GRYSCI------TPLETQNFQVIVTTPPRI--VSRLPVEVVYIGLSRTLTCRAEGHPEPSIT 392
            .: |.|:|.      .|.|.|.| ::|.:.||:  |:|.......:|......|:....|.....
 Worm   803 QQSGEYTCKADNGIGVPAEGQTF-LLVNSAPRVLPVARYAKTAGILGGVAKARCKVYAVPTVEFV 866

  Fly   393 WYHNGVHLNSSYTRY-ISGNELHVHSFDS-------------KEEGIYQCVARNVAGED------ 437
            |..:...:..:.::| |...::...:::|             |:   .:|:|||..|.|      
 Worm   867 WEKDEQLIKKNSSKYSIVNTQIDYSTYESTLWIKNIVPDDYTKK---VKCIARNSFGTDHLSIPI 928

  Fly   438 ----------------------SATGELRFNRQLEEVNPLQNIRCYPHSFHSINITFDSRTL--- 477
                                  |...|.||:...:::..::..|......|.:|.|..:..|   
 Worm   929 IPPTHPDEPFNLTMTNSTLNTISVAWEPRFDGGSDQIFEVKYRRQNDDLIHLVNTTHTNLRLSGL 993

  Fly   478 ----TSMFVVYIV--RNNPHSWTS---FSPMKLNQTSYVVISTD---LPVYEPFALITRVLFPTT 530
                |..|.:..:  |....||||   |:.:..:..:..:|..:   |..:.|:.||..|||   
 Worm   994 ATANTYFFQIRSINARGFASSWTSPVIFATLNEDGVNVAMIRNEKLKLTTWIPYILIFIVLF--- 1055

  Fly   531 EVRTGTLVPQQMILSSLRSTPVTCCTQGLMLRPIAVGNDTFVKWSQGQLENKKYFILQFSINHTH 595
                       |:|:     .|.||                                 |..|.|.
 Worm  1056 -----------MLLN-----VVICC---------------------------------FVCNRTK 1071

  Fly   596 PHPAQLLNGSLQGTLTSVEEKADQVRHHLTEIQPLNQSAAATVLRNVEHEDNVVDDTLELEDDIF 660
            ..              .:.||.:..|..:............|::.|.......:||..|:.:|..
 Worm  1072 KR--------------KLREKTEMARTAINGGDVRQVQMYGTMMGNDGMSRRDIDDRPEMSEDEH 1122

  Fly   661 SL--VVDASVTGIL 672
            |:  :::.|..|.:
 Worm  1123 SVRTMIEVSPNGYM 1136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
plumNP_001163744.1 IG_like 170..241 CDD:214653 25/126 (20%)
IGc2 175..235 CDD:197706 23/115 (20%)
IG_like 284..356 CDD:214653 21/83 (25%)
I-set 360..443 CDD:254352 19/126 (15%)
IGc2 378..435 CDD:197706 11/70 (16%)
FN3 804..886 CDD:238020
syg-2NP_001309674.1 IG_like 25..105 CDD:214653
Ig 33..122 CDD:299845
Ig 147..228 CDD:299845
IGc2 248..313 CDD:197706
Ig 450..537 CDD:299845 18/89 (20%)
Ig 559..632 CDD:299845 21/72 (29%)
I-set 657..738 CDD:254352 11/83 (13%)
Ig 665..738 CDD:299845 11/75 (15%)
IG_like 748..828 CDD:214653 21/85 (25%)
IGc2 756..817 CDD:197706 16/65 (25%)
Ig 845..922 CDD:299845 13/79 (16%)
FN3 934..1023 CDD:238020 17/88 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11640
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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