DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tx and Olig2

DIOPT Version :9

Sequence 1:NP_001287543.1 Gene:tx / 43190 FlyBaseID:FBgn0263118 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_058663.2 Gene:Olig2 / 50913 MGIID:1355331 Length:323 Species:Mus musculus


Alignment Length:264 Identity:72/264 - (27%)
Similarity:104/264 - (39%) Gaps:87/264 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 SKSRKNAPTKSKTK------APPLSKYRRKTANARERTRMREINTAFETLRHCVPEAIKGEDAAN 132
            |.|..:|.|.|..|      .|.|.:.|.| .|:|||.||.::|.|.:.||..:|.| .|...  
Mouse    83 SSSTSSAATSSTKKDKKQMTEPELQQLRLK-INSRERKRMHDLNIAMDGLREVMPYA-HGPSV-- 143

  Fly   133 TNEKLTKITTLRLAMKYITMLTDSIRD-PSYESEFIG---------EC--LEESANREARVDLEA 185
              .||:||.||.||..||.|||:|:.: ....||..|         .|  |..||          
Mouse   144 --RKLSKIATLLLARNYILMLTNSLEEMKRLVSEIYGGHHAGFHPSACGGLAHSA---------- 196

  Fly   186 NEEAEVELPVPVAKKPAKTKGSGKKSSAASKRQSQKQAKIVPQIPPISSGESCYATSSIGSPASS 250
                    |:|.|          ....||:...:...|...|.:||                 ::
Mouse   197 --------PLPTA----------TAHPAAAAHAAHHPAVHHPILPP-----------------AA 226

  Fly   251 AYASLSSSSNSHSSSSSPGLELDSLVGLNGISALDSL-----LLDTSDGDSLSCLSPGYGSLLTG 310
            |.|:.::::.:.||:|.||         :|:|::.|:     ||.:....:.:.|..|.|    |
Mouse   227 AAAAAAAAAAAVSSASLPG---------SGLSSVGSIRPPHGLLKSPSAAAAAPLGGGGG----G 278

  Fly   311 SGES 314
            ||.|
Mouse   279 SGGS 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
txNP_001287543.1 HLH 95..154 CDD:278439 26/58 (45%)
Olig2NP_058663.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..107 7/23 (30%)
bHLH_TS_OLIG2 95..179 CDD:381510 34/89 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 51 1.000 Inparanoid score I5457
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19290
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.060

Return to query results.
Submit another query.