DRSC/TRiP Functional Genomics Resources

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Protein Alignment tx and Neurod6

DIOPT Version :10

Sequence 1:NP_524516.2 Gene:tx / 43190 FlyBaseID:FBgn0288888 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_001102707.1 Gene:Neurod6 / 500137 RGDID:1562793 Length:337 Species:Rattus norvegicus


Alignment Length:297 Identity:80/297 - (26%)
Similarity:120/297 - (40%) Gaps:62/297 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 NDMAR--ATDSKDSRKRKTASARGEKYSLRQKRQKRGSNEDGESANLADFQLELDPIAEPASKS- 76
            :.|.|  |...:|.::.|...:..::..||.|..||...|:.|.....:.:.|.|....|..:. 
  Rat    15 SQMCRKFARQCEDQKQIKKPESFPKQVVLRGKSIKRAPGEETEKEEEEEDREEEDENGLPRRRGL 79

  Fly    77 RKNAPTKSKTKAPPLSKYRRKTANARERTRMREINTAFETLRHCVPEAIKGEDAANTNEKLTKIT 141
            ||...||.:.:.   .|:||:.||||||.||..:|.|.:.||..||       ..:..:||:||.
  Rat    80 RKKKTTKLRLER---VKFRRQEANARERNRMHGLNDALDNLRKVVP-------CYSKTQKLSKIE 134

  Fly   142 TLRLAMKYITMLTDSIRDPSYESEFIGECLEESANREARVDLEANEEAEVELPVPVAKKPAKTKG 206
            |||||..||..|::.:|        ||:          |.||           :...:...|...
  Rat   135 TLRLAKNYIWALSEILR--------IGK----------RPDL-----------LTFVQNLCKGLS 170

  Fly   207 SGKKSSAASKRQSQKQAKIVPQIPPISSGESCYATSSIGSPASSAYASLSSSSNSHSSSSSPGL- 270
            ....:..|...|...::.::.|     .||:.:.|.   ||.|:.|...    :|...::.||. 
  Rat   171 QPTTNLVAGCLQLNARSFLMGQ-----GGEAAHHTR---SPYSTFYPPY----HSPELATPPGHG 223

  Fly   271 ELD---SLVGLNGISALDSLLLDTSDGDSLSCLSPGY 304
            .||   |:...|..||.:|....||.    .|.||.:
  Rat   224 TLDNSKSMKPYNYCSAYESFYESTSP----ECASPQF 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
txNP_524516.2 bHLH_TS_taxi_Dei 95..157 CDD:381437 28/61 (46%)
Neurod6NP_001102707.1 bHLH_TS_NeuroD6_ATOH2 82..151 CDD:381565 31/78 (40%)
Neuro_bHLH 153..272 CDD:463621 30/141 (21%)

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