DRSC/TRiP Functional Genomics Resources

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Protein Alignment tx and ptf1a

DIOPT Version :10

Sequence 1:NP_524516.2 Gene:tx / 43190 FlyBaseID:FBgn0288888 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_997524.1 Gene:ptf1a / 368662 ZFINID:ZDB-GENE-030616-579 Length:265 Species:Danio rerio


Alignment Length:240 Identity:54/240 - (22%)
Similarity:92/240 - (38%) Gaps:75/240 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 NEDGESANLADFQL----------------ELDPIAEPASKSRKNAPTKSKTKAPPLSKYRRKTA 99
            ::||:..::.:|..                ||.|..:.....|:.. .:|:.:...|    |:.|
Zfish    61 SQDGDYCDVGNFSFSSSSSTFSYGCADSTSELSPHRDGGLLKRRRR-MRSEVEMQQL----RQAA 120

  Fly   100 NARERTRMREINTAFETLRHCVPEAIKGEDAANTNEKLTKITTLRLAMKYITMLTD------SIR 158
            |.|||.||:.||.|||.||..:|       .....::|:|:.|||||:.||..|.:      .||
Zfish   121 NVRERRRMQSINDAFEGLRSHIP-------TLPYEKRLSKVDTLRLAIGYINFLAELVQSDMPIR 178

  Fly   159 DPSYESEFIGECLEESANREARVDL-------EANEEAEVELPVPVAKKPAKTKGSGKKSSAASK 216
            :|.          .::.|:..:|.:       .:..:.:..|| |:|         |...|...:
Zfish   179 NPH----------SDALNQPKKVIICHRGTRSPSPNDPDYGLP-PLA---------GHSLSWTDE 223

  Fly   217 RQSQKQAKIVPQIPPISSGESCYATSSIGSPASSAYASLSSSSNS 261
            :|.:.|              :...|:.:.:|.......|.||.|:
Zfish   224 KQLKDQ--------------NIIRTAKVWTPEDPRKLHLKSSINN 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
txNP_524516.2 bHLH_TS_taxi_Dei 95..157 CDD:381437 26/67 (39%)
ptf1aNP_997524.1 bHLH_TS_PTF1A 117..171 CDD:381423 26/60 (43%)

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