DRSC/TRiP Functional Genomics Resources

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Protein Alignment tx and twist1a

DIOPT Version :9

Sequence 1:NP_001287543.1 Gene:tx / 43190 FlyBaseID:FBgn0263118 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_571059.1 Gene:twist1a / 30175 ZFINID:ZDB-GENE-000210-6 Length:171 Species:Danio rerio


Alignment Length:152 Identity:40/152 - (26%)
Similarity:70/152 - (46%) Gaps:29/152 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LNDMARATDSKDSRKRKTASARGEKYSLRQKRQKRGSNEDGESANLADFQLELDPIAEPASKSRK 78
            ::.:..:.:..|.|:.|..|        |:||..|.:.||.:|..             |..:|:|
Zfish    18 VDSLGNSEEELDRRQPKRVS--------RKKRASRKNAEDSDSPT-------------PGKRSKK 61

  Fly    79 NAPTKSKTKAPPLSKYRRKTANARERTRMREINTAFETLRHCVPEAIKGEDAANTNEKLTKITTL 143
            .:.:.|..::....:.:|..||.|||.|.:.:|.||.:||..:|..        .::||:||.||
Zfish    62 CSNSSSSPQSLEDLQTQRVMANVRERQRTQSLNEAFASLRKIIPTL--------PSDKLSKIQTL 118

  Fly   144 RLAMKYITMLTDSIRDPSYESE 165
            :||.:||..|...::....:|:
Zfish   119 KLAARYIDFLCQVLQSDELDSK 140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
txNP_001287543.1 HLH 95..154 CDD:278439 23/58 (40%)
twist1aNP_571059.1 HLH 78..128 CDD:278439 23/57 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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