DRSC/TRiP Functional Genomics Resources

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Protein Alignment tx and Neurog1

DIOPT Version :9

Sequence 1:NP_001287543.1 Gene:tx / 43190 FlyBaseID:FBgn0263118 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_062080.1 Gene:Neurog1 / 29410 RGDID:3167 Length:244 Species:Rattus norvegicus


Alignment Length:275 Identity:69/275 - (25%)
Similarity:98/275 - (35%) Gaps:101/275 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 SNEDGESAN----LADFQLE------LDPIAEPASKS---RKNAPTKSKTKAPP----------- 90
            |:.|..|:|    |:.|..:      |.|:|..:..|   |::|||.|.....|           
  Rat    10 SDLDCASSNSGSDLSSFLTDEEDCARLQPLASTSGLSVPARRSAPTLSGASNVPGGQDEEQERRR 74

  Fly    91 ---------------LSKYRRKTANARERTRMREINTAFETLRHCVPEAIKGEDAANTNEKLTKI 140
                           |.:.||..||.|||.||..:|.|.:.||..:|       :...:.|||||
  Rat    75 RRGRARVRSEALLHSLRRSRRVKANDRERNRMHNLNAALDALRSVLP-------SFPDDTKLTKI 132

  Fly   141 TTLRLAMKYITMLTDSIRDPSYESEFIGECLEESANREARVDLEANEEAEVELPVPVAKKPAKTK 205
            .|||.|..||..|.:::|                             .|:..||           
  Rat   133 ETLRFAYNYIWALAETLR-----------------------------LADQGLP----------- 157

  Fly   206 GSGKKSSAASKRQSQKQAKIVPQIP----PISSGESCYATSSIGSPASSAYASLSSSSNSHSSSS 266
            |.|       .|:.....:.||.:|    |.|..|| :.:.:..||.::..:.||..|:..:|..
  Rat   158 GGG-------ARERLLPPQCVPCLPGPPSPASDTES-WGSGAAASPCATVASPLSDPSSPSASED 214

  Fly   267 ---SPGLELDSLVGL 278
               .||..|.|..||
  Rat   215 FTYGPGGPLFSFPGL 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
txNP_001287543.1 HLH 95..154 CDD:278439 25/58 (43%)
Neurog1NP_062080.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 43..84 7/40 (18%)
bHLH_TS_NGN1_NeuroD3 83..154 CDD:381559 29/106 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR19290
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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