DRSC/TRiP Functional Genomics Resources

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Protein Alignment tx and hlh-16

DIOPT Version :9

Sequence 1:NP_001287543.1 Gene:tx / 43190 FlyBaseID:FBgn0263118 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_492372.2 Gene:hlh-16 / 183973 WormBaseID:WBGene00001960 Length:146 Species:Caenorhabditis elegans


Alignment Length:161 Identity:44/161 - (27%)
Similarity:66/161 - (40%) Gaps:46/161 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 ELDPIAEPASKSRKNAPTKSKTKAPPLSKYR----RKTANARERTRMREINTAFETLRHCVPEAI 125
            |.:|...     ||.:....:.|...|::..    |.:.|:|||.||.|:|..|||||.|:|.  
 Worm    12 EFEPYVR-----RKRSEAGGRKKMQGLNEQEQNLLRNSINSRERRRMHELNDEFETLRECLPY-- 69

  Fly   126 KGEDAANTNEKLTKITTLRLAMKYITMLTDSIRDPSYESEFIGECLEESANREARVDLEANEEAE 190
              .:.|| :.:::|..||.||..:|..|.:                             ||.:.:
 Worm    70 --PNEAN-SRRMSKANTLLLASNWIKQLAN-----------------------------ANHKLQ 102

  Fly   191 VELPVPVAKKPA---KTKGSGKKSSAASKRQ 218
            :||.:..||..:   :.|...|.||..||.|
 Worm   103 MELNMANAKIDSLMVQLKKVEKPSSKCSKCQ 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
txNP_001287543.1 HLH 95..154 CDD:278439 24/62 (39%)
hlh-16NP_492372.2 bHLH_TS 42..96 CDD:381396 25/58 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19290
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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