DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG33970 and abca3b

DIOPT Version :9

Sequence 1:NP_001034071.1 Gene:CG33970 / 43186 FlyBaseID:FBgn0053970 Length:777 Species:Drosophila melanogaster
Sequence 2:XP_009297489.1 Gene:abca3b / 564344 ZFINID:ZDB-GENE-050517-2 Length:1703 Species:Danio rerio


Alignment Length:900 Identity:190/900 - (21%)
Similarity:350/900 - (38%) Gaps:234/900 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 DLDLAARRRLFISQPSTLATRRQQAVCVRRAHKMYG-SSKNPNVVLDGLNMTVPKGSIYGLLGAS 86
            |.:.|::......:|:.|..    .|.::|..|::. .:|:...|.| |.:.:.:|.|..|||.:
Zfish   507 DAEKASKGEFMEEEPAGLVA----GVKIKRLAKVFKVGNKSKEAVRD-LTLNMFEGQITVLLGHN 566

  Fly    87 GCGKTTLLSCIVGRRRLNSGEIWVLGGRPGSRGSGVPGPRIGYMPQEIALYGEFTMRETLIYFGI 151
            |.||||.||.:.|....:||..:: .|....:...:....:|..||...|:...|:||.|:::..
Zfish   567 GAGKTTTLSMLTGLFPPSSGRAYI-NGYDICQDMALIRRSLGLCPQHDVLFDNLTVREHLLFYTQ 630

  Fly   152 ISAMSKGDIEDRTEFLLKLLNLP---NASKFVKNLSGGQQRRVSLAVALLHEPELLILDEPTVGV 213
            :....:..|....:.::::|||.   ||.  .|.||||.:|::|:.:||:.:.::::|||||.|:
Zfish   631 LKGYPREKIPGEVDRIIRILNLEDKRNAK--CKTLSGGMKRKLSIGIALIGDSKVVMLDEPTSGM 693

  Fly   214 DPVLRQSIWDHLVDITKNGHTTVIITTHYIDECAQAHMIG----LLRGGKMLAEESPDYLRQQYN 274
            ||..|::.|| |:...|.|. |:::|||::||   |.::|    ::..|::....||.:|:.:|.
Zfish   694 DPSARRATWD-LLQGEKRGR-TILLTTHFMDE---ADLLGDRIAIMASGELQCCGSPLFLKNKYG 753

  Fly   275 AD----SLEDVFLKLSVLQNM------GKRRRSSIAQEI-------------------------- 303
            |.    .::|.|..:|.:..:      .....||...|:                          
Zfish   754 AGYHMVIVKDAFCNVSEITRLVHMYVPDATLESSAGAELSYILPKESTSRFELLFAELEMNRDEL 818

  Fly   304 -----------VEQV------------TVPAISNPALDMSDEQH--------AAEISG------- 330
                       :|:|            .:.||..|||....|:.        ::.|||       
Zfish   819 GIASYGASVTTMEEVFLRVGKLVDSSLDIQAIQLPALQYQHERRSHDWTMDDSSSISGMTDVTDF 883

  Fly   331 --------EFGDNISMSSAARDPISTTAPAAPPLPPPQEIPTSFWYNLHVMQSHHLHALIWKNFL 387
                    |.|.||.:::.||                          |::.|   .:|:..|..|
Zfish   884 TDSCTMISEDGSNIKLNTGAR--------------------------LYMQQ---FYAMFLKRAL 919

  Fly   388 WMMRNVGVML--FIVGLPVVQILLFCYA----IGHDPTGLKLAVANHEMSGEMIMEQFCPVHTGC 446
            :..||..||:  |:|.| :..:|....|    ..|....|:||:..:   |:..:......:.|.
Zfish   920 YSWRNWKVMVAQFLVPL-IFTVLALVVARSLPSSHSSPQLRLALKQY---GQTHVPVAVEANAGP 980

  Fly   447 NQTMLSCRYLDMLVKNKSMVVQYVTD--DEMAYEEVRKGRAWAALVIQPNYTASLMERVEDGRYA 509
            ..::|:..|...|....::....:||  :.:.|...|:|.|:                  :....
Zfish   981 LASLLAEIYTTQLPSQNAIAAPNITDFSEYVLYNAQREGGAF------------------NEHCV 1027

  Fly   510 EDGTIESSDLAVRMDWSNQQ-----ISQLLYRDLQYTFFNFVGDMLSDCDVNPKLGR--VPVDFQ 567
            ......|||:   :.:.|.|     .:.|:..|      |.:..:|:..:.:.:.|.  :|.:..
Zfish  1028 VGAAFRSSDV---IGYFNNQGYHTPATALMLVD------NALFKLLAGPNASIQTGNDPMPRNVS 1083

  Fly   568 HPVYGYRNPNFTDFAAPGVILTIIFFLAVAVTSGAMLIDRNEGMLERCL--VAGITGPEILLSQV 630
            .......:.:.|.||   :.:.:::.:|...::.|:|:.....:..:.:  |:|:.......|.:
Zfish  1084 ETAQSQLSESQTGFA---IAINLMYGMASLASTFALLLVSERSVKSKHVQQVSGVYLTNFWFSAL 1145

  Fly   631 VTQFTVMLSQTTFVLIVSFYF---------------FELTLVGNIWLVVALCILNGLCGMSFGFV 680
            :......|.....:|:|...|               |.|.|.|  |.|:.|..|     |||.|.
Zfish  1146 LWDLINFLLPCLLMLVVFRVFSVKAFVAQNHLVDVLFLLLLYG--WAVIPLMYL-----MSFLFS 1203

  Fly   681 ISCAVDT--------ERTATYVAMGSF----LPIVMLCGIIWPIEGMFP---LLQFFTAFL---- 726
            .:....|        ..|||::|:...    |.::.|..::..:..:||   |...||.|.    
Zfish  1204 TAATAYTRLTIFNIISGTATFLAVTIMTIPELNLLHLSHLLDKVFLIFPNYCLGMSFTEFYQNYE 1268

  Fly   727 --------PLTKPTESMRSIL--QRGWGIDNPVVYNGFISISSWVLVFLVLTILL 771
                    ||.|......:|.  ...:.::.|.|....:::|...:||::|..|:
Zfish  1269 MITFCTSSPLAKYICKYYNITYQMNYFSMEEPGVGRFLVALSLQGVVFIILLFLI 1323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33970NP_001034071.1 P-loop_NTPase 48..270 CDD:304359 71/229 (31%)
CcmA 54..321 CDD:224054 85/333 (26%)
ABC2_membrane_3 394..770 CDD:289468 81/436 (19%)
ABC2_membrane <581..738 CDD:279410 40/200 (20%)
abca3bXP_009297489.1 AAA 1..>95 CDD:333001
AAA <122..1695 CDD:333001 190/899 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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