DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG33970 and ABCA13

DIOPT Version :9

Sequence 1:NP_001034071.1 Gene:CG33970 / 43186 FlyBaseID:FBgn0053970 Length:777 Species:Drosophila melanogaster
Sequence 2:XP_011513432.1 Gene:ABCA13 / 154664 HGNCID:14638 Length:5059 Species:Homo sapiens


Alignment Length:967 Identity:190/967 - (19%)
Similarity:337/967 - (34%) Gaps:297/967 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 LAARRRLFIS------------QPSTLATRRQQ------AVCVRRAHKMYGSSKNPNVVLDGLNM 72
            |..:|:.|:|            :.|:|..|..:      .|.:....|.|...|   .|:..|::
Human  3802 LVEKRQYFLSSSLFFFNENFDNKGSSLQNREGELEGSAPGVTLVSVTKEYEGHK---AVVQDLSL 3863

  Fly    73 TVPKGSIYGLLGASGCGKTTLLSCIVGRRRLNSGEIWVLGGRPGSRGSGVPGPRIGYMPQEIALY 137
            |..:..|..|||.:|.||||::|.:.|.....||.| ::.|:............:|..||:..|.
Human  3864 TFYRDQITALLGTNGAGKTTIISMLTGLHPPTSGTI-IINGKNLQTDLSRVRMELGVCPQQDILL 3927

  Fly   138 GEFTMRETLIYFGIISA--MSKGDIEDRTEFLLKLLNL-PNASKFVKNLSGGQQRRVSLAVALLH 199
            ...|:||.|:.|..|.|  .:|.::..:....|:.::| .:..|..:.||||.:|::||.:|.:.
Human  3928 DNLTVREHLLLFASIKAPQWTKKELHQQVNQTLQDVDLTQHQHKQTRALSGGLKRKLSLGIAFMG 3992

  Fly   200 EPELLILDEPTVGVDPVLRQSIWDHLVDITKNGHTTVIITTHYIDEC-AQAHMIGLLRGGKMLAE 263
            ....::|||||.||||..|.|:||.|:...:.  .|:|.|||::||. |.:..:.:|:.|::...
Human  3993 MSRTVVLDEPTSGVDPCSRHSLWDILLKYREG--RTIIFTTHHLDEAEALSDRVAVLQHGRLRCC 4055

  Fly   264 ESPDYLRQQYNADSLEDVFLKLSVLQNMGKRRRSSIAQEIVEQVTVPAISNPALDMSDEQHAAEI 328
            ..|..|::.|...      |:|::      .|:.|:.:              |.|:.|......:
Human  4056 GPPFCLKEAYGQG------LRLTL------TRQPSVLE--------------AHDLKDMACVTSL 4094

  Fly   329 SGEFGDNISMSSAARDPISTTAPAAPPLPPPQEIPTSFWYNLHVMQSHHL------HALIWKNFL 387
            ...:.....:..::...::.|.|........:.:..:...|||.:   ||      ...:.:.||
Human  4095 IKIYIPQAFLKDSSGSELTYTIPKDTDKACLKGLFQALDENLHQL---HLTGYGISDTTLEEVFL 4156

  Fly   388 WMMRNVGVMLFIVGLPVVQILLFCYAIG-------HDPTGLKLAVANHEMSG------------- 432
            .::::......|             |:|       |.|||        .:||             
Human  4157 MLLQDSNKKSHI-------------ALGTESELQNHRPTG--------HLSGYCGSLARPATVQG 4200

  Fly   433 -EMIMEQFCPVHTGCNQTMLSCRYLDMLVKNKSMVVQYVTDDEMAYEEVRKGRAWAALVIQPNYT 496
             :::..|...:        |:.|....|...||.:.      ::....:....|....:::|..|
Human  4201 VQLLRAQVAAI--------LARRLRRTLRAGKSTLA------DLLLPVLFVALAMGLFMVRPLAT 4251

  Fly   497 ASLMERVEDGRY--AE-----------------------DGTIESSDLAVRMD----WSNQQISQ 532
            .....|:..|.|  ||                       |..:..:||..|..    |.....|.
Human  4252 EYPPLRLTPGHYQRAETYFFSSSGGDNLDLTRVLLRKFRDQDLPCADLNPRQKNSSCWRTDPFSH 4316

  Fly   533 LLYRD--------------------LQYTFFNFVG----DMLSDCDVNPKLG------RVPVD-- 565
            ..::|                    |.:|..|..|    :.|......|:||      ::|.:  
Human  4317 PEFQDSCGCLKCPNRSASAPYLTNHLGHTLLNLSGFNMEEYLLAPSEKPRLGGWSFGLKIPSEAG 4381

  Fly   566 -------------------------------------FQH--PVYGYRNPNFTDFAAP------- 584
                                                 :||  |...:|....|.::.|       
Human  4382 GANGNISKPPTLAKVWYNQKGFHSLPSYLNHLNNLILWQHLPPTVDWRQYGITLYSHPYGGALLN 4446

  Fly   585 -----------GVILTIIF-FLAVAVTSGAMLI-DRNEGMLERCLVAGITGPEILLSQVVTQFTV 636
                       ||.|.|:. |..::.:.|:.:: ||..|......::|       |...:..||.
Human  4447 EDKILESIRQCGVALCIVLGFSILSASIGSSVVRDRVIGAKRLQHISG-------LGYRMYWFTN 4504

  Fly   637 MLSQTTFVL---------IVSFYFFELTLVGNIWLVVALCILNGLCGMSFGFVISCAVDTERTA- 691
            .|....|.|         ||:|.....|...|:.....|..|.|...:.:.:::|....:...| 
Human  4505 FLYDMLFYLVSVCLCVAVIVAFQLTAFTFRKNLAATALLLSLFGYATLPWMYLMSRIFSSSDVAF 4569

  Fly   692 -TYVAMGSFLPIVMLCGIIWP-----------IEGMFPLLQF-FTAFLPLTKPT----------- 732
             :||::.....:..:...|.|           ::.::.:|:: ||.|     |.           
Human  4570 ISYVSLNFIFGLCTMLITIMPRLLAIISKAKNLQNIYDVLKWVFTIF-----PQFCLGQGLVELC 4629

  Fly   733 -ESMRSILQRGWGID---NPVVYNG----FISISSWVLVFLVLTIL----LLKFKKG 777
             ..::..|...:|||   :|...|.    |:.::|...|.|:|.:|    ||::.:|
Human  4630 YNQIKYDLTHNFGIDSYVSPFEMNFLGWIFVQLASQGTVLLLLRVLLHWDLLRWPRG 4686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33970NP_001034071.1 P-loop_NTPase 48..270 CDD:304359 70/225 (31%)
CcmA 54..321 CDD:224054 77/270 (29%)
ABC2_membrane_3 394..770 CDD:289468 91/558 (16%)
ABC2_membrane <581..738 CDD:279410 36/211 (17%)
ABCA13XP_011513432.1 rim_protein 3068..5049 CDD:130324 190/967 (20%)
ABC_subfamily_A 3842..4062 CDD:213230 70/225 (31%)
ABC_subfamily_A 4719..4945 CDD:213230
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0059
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.