DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6142 and HTH

DIOPT Version :9

Sequence 1:NP_651466.1 Gene:CG6142 / 43178 FlyBaseID:FBgn0039415 Length:616 Species:Drosophila melanogaster
Sequence 2:NP_565050.1 Gene:HTH / 843628 AraportID:AT1G72970 Length:594 Species:Arabidopsis thaliana


Alignment Length:642 Identity:157/642 - (24%)
Similarity:257/642 - (40%) Gaps:165/642 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VDLARDF----ETSFLNNRIPDTTRFLPEYDFIIVGAGSAGCVMANRLSEISSASVLLLEAGDQE 83
            :|.|..|    .:||.:|. .|::     ||:|::|.|:|||.:|..||:  :.|||:||.|   
plant    40 IDKASTFSSSSSSSFSSNG-QDSS-----YDYIVIGGGTAGCPLAATLSQ--NFSVLVLERG--- 93

  Fly    84 TFISDVPLTAALTQMTR-YNWGYKAEPTEHACQGL--KGGVCNWPKGRGVGGTSLINFMLYTRGH 145
                .||.|.|.....| ::.|........|.|..  ..||.| .:.|.:||.|.||...|:|. 
plant    94 ----GVPFTNANVSFLRNFHIGLADISASSASQAFVSTDGVYN-ARARVLGGGSCINAGFYSRA- 152

  Fly   146 RRDYDEWAAANNSGWSYDELLPYFRKSERIGIPELYKSPYHGRNGQL--DVQYTDYRSQLLKAFL 208
                 :.|....:||.                |:|.|..|.....::  ..:.|.::..|..:.|
plant   153 -----DAAFVKRAGWD----------------PKLVKESYPWVEREIVHQPKLTLWQKALRDSLL 196

  Fly   209 KSGREMGYEITDPNG---EHLMGFARSQATI--RNGRRCSTSKAFIQPVVNRKNLHISMKSWVTR 268
            :.|      :...||   :|:.| .:...||  |.|||.:.::  :....|.:.|.:.:.:.|.:
plant   197 EVG------VRPFNGFTYDHVSG-TKIGGTIFDRFGRRHTAAE--LLAYANPQKLRVLIYATVQK 252

  Fly   269 LIIDP--ITKTATGVEFVKQR---QRYVVRARK--EVILSAGTIASPQLLMLSGIGPAEHLREHN 326
            ::.|.  .....|||.|..::   .:.::..||  |||||:|.|.|||:||||||||.:.|:...
plant   253 IVFDTSGTRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLK 317

  Fly   327 I-TVMQDLPVGYNLQDHITLNGLVFVVNDSTVNDARLLNPSDIFR---YIFAGQGPYTIPGGAEA 387
            | .|:::..||..:.|: .:| .:.|.:.:.:..: |:....|.:   |:.|..|          
plant   318 IPVVLENEHVGKGMADN-PMN-TILVPSKAPIEQS-LIQTVGITKMGVYVEASTG---------- 369

  Fly   388 FAFVRTPSSKFAKDYPDMELVLGAGSLSGDRFGTM--------RNLLGITDEFYDYMFGDLQSKE 444
              |.::|.|        :....|..|...:.|.|:        .....||...|       |..|
plant   370 --FGQSPES--------IHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKY-------QLHE 417

  Fly   445 TFG---LVPVLLRPKSRGRISLRSRNPFHWPRMEPNFMQHPDDVRAMIEGIEMILKLSRSKPMAK 506
            .|.   ::..|..|.|||.:||.:.|....|.:..|:.:||.|::..:|.|.::.|:..|     
plant   418 AFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTS----- 477

  Fly   507 MGTRFHDRPFPGCE----------------NLK------------FASEAYWKCCLRRYGSSLQH 543
              .||.:  :..|:                ||:            |..:..         .::.|
plant   478 --NRFLN--YTQCDKQNVHKMLSLSVKANINLRPKQLNDTKSMAQFCKDTV---------VTIWH 529

  Fly   544 QSGTCKMGPATDNTSVVDAQLRIHGIRGLRVVDASVLPNVPAGHTNAIVIMVAEKAG 600
            ..|.|.:|      .||....::.|:..|||:|.|.....|..:..|.::|:....|
plant   530 YHGGCLVG------KVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMG 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6142NP_651466.1 PRK02106 47..604 CDD:235000 150/614 (24%)
NADB_Rossmann 48..342 CDD:304358 90/311 (29%)
GMC_oxred_C 455..599 CDD:282984 37/171 (22%)
HTHNP_565050.1 PLN02785 18..594 CDD:215420 157/642 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 103 1.000 Domainoid score I2249
eggNOG 1 0.900 - - E1_COG2303
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 163 1.000 Inparanoid score I1608
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D798314at2759
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - mtm950
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X135
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.870

Return to query results.
Submit another query.