DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6142 and chdh-1

DIOPT Version :9

Sequence 1:NP_651466.1 Gene:CG6142 / 43178 FlyBaseID:FBgn0039415 Length:616 Species:Drosophila melanogaster
Sequence 2:NP_495846.1 Gene:chdh-1 / 174390 WormBaseID:WBGene00007917 Length:599 Species:Caenorhabditis elegans


Alignment Length:591 Identity:208/591 - (35%)
Similarity:299/591 - (50%) Gaps:86/591 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 IIVGAGSAGCVMANRLSEISSASVLLLEAGD-QETFISDVPLTAALTQ---MTRYNWGYKAEPTE 111
            |||||||||||:||||:|..|..|||:|||. ...:...:.:.|||..   ...|||.|...   
 Worm    41 IIVGAGSAGCVLANRLTEDPSNRVLLIEAGPVDHKWDWRIHMPAALMYNLCSDTYNWHYHTT--- 102

  Fly   112 HACQGLKGGVCNWPKGRGVGGTSLINFMLYTRGHRRDYDEWAAANNSGWSYDELLPYFRKSERIG 176
             |.:.|...|..||:||..||:|.:|.|.|.|||..||:.|.....|||:|...||||:|:|...
 Worm   103 -AQKNLGNRVFYWPRGRVWGGSSTLNAMCYVRGHAYDYNRWEKEGASGWNYANCLPYFKKAETYS 166

  Fly   177 IPELYKSPYHGRNGQLDVQYTDYRSQLLKAFLKSGRE--MGYEITDPNGEHLMGFARSQATIRNG 239
            .......||.|.||.|.|:..|..:.|.||:|..|:|  :|: ..|.|||...|.:....||.||
 Worm   167 DATGPNDPYRGNNGPLYVKKGDAENPLHKAWLNVGKEHPLGW-TNDMNGEKQEGISTMDMTIHNG 230

  Fly   240 RRCSTSKAFIQPVVNRKNLHISMKSWVTRLIIDPITKTATGVEFVKQ-----------RQRYVVR 293
            .|.|.|||::.|:.||.||..|.....||::.|  |..|.|:||:::           ..|..:.
 Worm   231 ERWSASKAYVHPIRNRPNLITSSGITCTRVLFD--TNKAIGIEFIRKLNFVGTDSIDSYSREKIY 293

  Fly   294 ARKEVILSAGTIASPQLLMLSGIGPAEHLREHNITVMQDLP-VGYNLQDHITLNGLVFVVNDSTV 357
            .:.:|||:.|.|.:||||||||:|||:|||.|.|.::.:|| ||.|||||:.    ::|..:|| 
 Worm   294 CQGDVILAGGAINTPQLLMLSGVGPADHLRSHEIPIVANLPGVGQNLQDHLE----IYVQQEST- 353

  Fly   358 NDARLLNPSDIFRY----IFAGQGPYTIPGGAEAFAFVRTPSSKFAKD-----YPDMEL------ 407
            ....|.|.|. :::    |..|...:|...|..|.:.:.|  ..||:.     :||::.      
 Worm   354 QPVTLYNKSS-WKFPHNMIKIGLEWFTNRTGLGASSHLET--GGFARSDDTVTHPDIQFHFLPST 415

  Fly   408 VLGAGSLSGDRFGTMRNLLGITDEFYDYMFGDLQSKETFGLVPVLLRPKSRGRISLRSRNPFHWP 472
            |...|..:|...|            |....|.::|             :|:|.|.|::::|...|
 Worm   416 VHDDGRTNGTCHG------------YQVHVGPMRS-------------QSKGYIMLQAKDPRRAP 455

  Fly   473 RMEPNFMQHPDDVRAMIEGIEMILKLSRSKPMAKMGTRFHDR---PFPGCENLKFASEAYWKCCL 534
            .:.||:|:...|.|.    ....:::||....:|....|..:   |.|.|:     |:|.....:
 Worm   456 IINPNYMEEDSDWRE----FRKCIRVSRELFASKAFDEFRGKELAPGPDCQ-----SDADIDRFV 511

  Fly   535 RRYGSSLQHQSGTCKMGPATDNTSVVDAQ-LRIHGIRGLRVVDASVLPNVPAGHTNAIVIMVAEK 598
            :...:|..|.|.|||||...|..:||:.: :.::|...|:||||||:|::.:|:.||.|||:||:
 Worm   512 KEKAASAYHPSCTCKMGSENDKMAVVNPETMGVYGTENLKVVDASVMPSIVSGNLNAPVIMMAER 576

  Fly   599 AGDMIK 604
            |.|:||
 Worm   577 AADLIK 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6142NP_651466.1 PRK02106 47..604 CDD:235000 206/589 (35%)
NADB_Rossmann 48..342 CDD:304358 131/308 (43%)
GMC_oxred_C 455..599 CDD:282984 48/147 (33%)
chdh-1NP_495846.1 PRK02106 41..599 CDD:235000 208/591 (35%)
NADB_Rossmann 41..>78 CDD:304358 23/36 (64%)
NADB_Rossmann 108..345 CDD:304358 101/239 (42%)
GMC_oxred_C 439..577 CDD:282984 48/146 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 214 1.000 Domainoid score I1583
eggNOG 1 0.900 - - E1_COG2303
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 310 1.000 Inparanoid score I1553
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52181
OrthoDB 1 1.010 - - D173099at33208
OrthoFinder 1 1.000 - - FOG0000165
OrthoInspector 1 1.000 - - otm14159
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X135
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.880

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