DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps2 and DID4

DIOPT Version :9

Sequence 1:NP_651455.1 Gene:Vps2 / 43164 FlyBaseID:FBgn0039402 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_012924.2 Gene:DID4 / 853868 SGDID:S000001485 Length:232 Species:Saccharomyces cerevisiae


Alignment Length:256 Identity:108/256 - (42%)
Similarity:158/256 - (61%) Gaps:32/256 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKMAKEGQMDAVKIMAKDL 66
            :|:|||.::|.|.|:||||||.:..|:|:||:.|:|.|:||::::|||.||.||:.|.|:.||||
Yeast     5 EWVFGKNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDL 69

  Fly    67 VRTRRYAKKFMLMKANIQAVSLKIQTLKSQNTMAQAMKGVTKAMQNMNRQLNLPQIQKILQDFEK 131
            ||||.|.:||..|||.:||:||:||.::|.:.|.::|...|..:..|||.:||||:|:|..:|||
Yeast    70 VRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEK 134

  Fly   132 QSEMMDMKEEMINDAIDDAMEDEGDE-EETDAVVSQVLDELGLQLGEQLGDLPSASGSLSIAGGA 195
            ||::|..::|.:::|||:.|.||.|| ||.|.:|::||||:|:.|..||...|..    .::...
Yeast   135 QSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQLQSTPQN----LVSNAP 195

  Fly   196 GAQKAQAVAAGGVGGGGAAGGGGASGGGAGGPGAPGGSGASSPM-SDADADLQARLDKLRK 255
            .|:.|.                          |.|...||.|.. .:.|.||||||:.|:|
Yeast   196 IAETAM--------------------------GIPEPIGAGSEFHGNPDDDLQARLNTLKK 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps2NP_651455.1 Snf7 17..185 CDD:281366 85/168 (51%)
DID4NP_012924.2 Did4 38..229 CDD:227778 89/220 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157341331
Domainoid 1 1.000 172 1.000 Domainoid score I759
eggNOG 1 0.900 - - E1_COG5491
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6382
Inparanoid 1 1.050 195 1.000 Inparanoid score I882
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53529
OrthoFinder 1 1.000 - - FOG0005101
OrthoInspector 1 1.000 - - oto99854
orthoMCL 1 0.900 - - OOG6_102450
Panther 1 1.100 - - LDO PTHR10476
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R316
SonicParanoid 1 1.000 - - X3622
TreeFam 1 0.960 - -
1514.790

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