DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps2 and chmp2b

DIOPT Version :10

Sequence 1:NP_651455.1 Gene:Vps2 / 43164 FlyBaseID:FBgn0039402 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_998866.1 Gene:chmp2b / 407966 XenbaseID:XB-GENE-948820 Length:214 Species:Xenopus tropicalis


Alignment Length:201 Identity:69/201 - (34%)
Similarity:124/201 - (61%) Gaps:4/201 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKMAKEGQMDAVKIMAKDLVR 68
            ||.|| :.|:::|:..:.|....|.:.|:|..:|:|||::..:||||||.|..||.:::||.||:
 Frog     4 LFKKK-TVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQ 67

  Fly    69 TRRYAKKFMLMKANIQAVSLKIQTLKSQNTMAQAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQS 133
            .|:...:...:.:.:.::|.:.:.:.||..||.||....|.||.:|::::..:..:.:|:|:|::
 Frog    68 LRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKEN 132

  Fly   134 EMMDMKEEMINDAIDDAMEDEGDEEETDAVVSQVLDELGLQLGEQLGDLPSASGSLSIAGGAGAQ 198
            ..|:|.||||||.:||..:...||||:..:|:|||||:|:::..::...|||:..|.   ...|.
 Frog   133 MKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLP---STSAS 194

  Fly   199 KAQAVA 204
            |:..::
 Frog   195 KSSGIS 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps2NP_651455.1 Snf7 17..185 CDD:460896 58/167 (35%)
chmp2bNP_998866.1 Snf7 16..185 CDD:460896 59/168 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..203 6/26 (23%)
MIT-interacting motif 202..212
Blue background indicates that the domain is not in the aligned region.

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