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Protein Alignment Vps2 and Chmp1a
DIOPT Version :9
Sequence 1: | NP_651455.1 |
Gene: | Vps2 / 43164 |
FlyBaseID: | FBgn0039402 |
Length: | 256 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001076782.1 |
Gene: | Chmp1a / 365024 |
RGDID: | 1311083 |
Length: | 196 |
Species: | Rattus norvegicus |
Alignment Length: | 168 |
Identity: | 41/168 - (24%) |
Similarity: | 91/168 - (54%) |
Gaps: | 3/168 - (1%) |
- Green bases have known domain annotations that are detailed below.
Fly 27 RDLDRERMKMEQQEKKIIADIKKMAKEGQMDAVKIMAKDLVRTRRYAKKFMLMKANIQAVSLKIQ 91
:.|::...|.|:..|...|.:||..::..::..::.|::.:|.:.....::.|.:.:.||:.|:|
Rat 13 KQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQ 77
Fly 92 TLKSQNTMAQAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQSEMMDMKEEMINDAIDDAMEDEGD 156
|..:...:.:.|..||||:......::|.::..::..||:|.:.:|:...::.|::..|......
Rat 78 TAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTP 142
Fly 157 EEETDAVVSQVLDELGLQLGEQLGDLP---SASGSLSI 191
:|:.|:::.|:.:|.||::.:||..|| ||.|..|:
Rat 143 QEQVDSLIVQIAEENGLEVLDQLSQLPEGASAVGESSV 180
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Vps2 | NP_651455.1 |
Snf7 |
17..185 |
CDD:281366 |
37/160 (23%) |
Chmp1a | NP_001076782.1 |
Snf7 |
12..195 |
CDD:419749 |
41/168 (24%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG5491 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.810 |
|
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