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Protein Alignment Vps2 and Chmp2b
DIOPT Version :9
Sequence 1: | NP_651455.1 |
Gene: | Vps2 / 43164 |
FlyBaseID: | FBgn0039402 |
Length: | 256 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_343996.5 |
Gene: | Chmp2b / 363720 |
RGDID: | 1306781 |
Length: | 213 |
Species: | Rattus norvegicus |
Alignment Length: | 194 |
Identity: | 69/194 - (35%) |
Similarity: | 122/194 - (62%) |
Gaps: | 1/194 - (0%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 LFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKMAKEGQMDAVKIMAKDLVR 68
||.|| :.|:::::..|.|....|.:.|:|..:|:|||::..:||||||.|..:|.:::||.||.
Rat 4 LFKKK-TVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVH 67
Fly 69 TRRYAKKFMLMKANIQAVSLKIQTLKSQNTMAQAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQS 133
.|:...:...:.:.:.::|.:.:.:.||..||.||....|.||.:|::::..:..:.:|:|:|::
Rat 68 LRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKEN 132
Fly 134 EMMDMKEEMINDAIDDAMEDEGDEEETDAVVSQVLDELGLQLGEQLGDLPSASGSLSIAGGAGA 197
..|:|.||||||.:||..:...||||:..:|:|||||:|:::..::...|||:.||..|..:.|
Rat 133 MKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKA 196
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Vps2 | NP_651455.1 |
Snf7 |
17..185 |
CDD:281366 |
58/167 (35%) |
Chmp2b | XP_343996.5 |
Snf7 |
16..185 |
CDD:397437 |
59/168 (35%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG5491 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
1 |
1.010 |
- |
- |
|
QHG53529 |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
3 | 2.820 |
|
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