DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vps2 and did4

DIOPT Version :9

Sequence 1:NP_651455.1 Gene:Vps2 / 43164 FlyBaseID:FBgn0039402 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_593871.3 Gene:did4 / 2543521 PomBaseID:SPAC4F8.01 Length:210 Species:Schizosaccharomyces pombe


Alignment Length:253 Identity:92/253 - (36%)
Similarity:144/253 - (56%) Gaps:49/253 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 WLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKMAKEGQMDAVKIMAKDLV 67
            ||||...||.|.||.:||:|.:|.|:|||||.|::|:|:.:|.:||..||.|...|.:|.|:||:
pombe     6 WLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDLM 70

  Fly    68 RTRRYAKKFMLMKANIQAVSLKIQTLKSQNTMAQAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQ 132
            |.|...||.|..|..:||:||::||:::...|.|:|:|.|:.:..||:.:|:|.:.:|.|.||::
pombe    71 RLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARITQQFERE 135

  Fly   133 SEMMDMKEEMINDAIDDAMEDEGDEEETDAVVSQVLDELGLQLGEQLGDLPSASGSLSIAGGAGA 197
            :|:|:.::|||::.:|||:| |.||||.|.:|::||||:|:.|.:.|.|..:..|::        
pombe   136 NEIMEQRQEMIDENMDDALE-EDDEEEADELVNKVLDEIGVDLSQGLPDAATQIGTV-------- 191

  Fly   198 QKAQAVAAGGVGGGGAAGGGGASGGGAGGPGAPGGSGASSPMSDADADLQARLDKLRK 255
                                                    |....:.:||||||:|.|
pombe   192 ----------------------------------------PELKTEDNLQARLDELAK 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps2NP_651455.1 Snf7 17..185 CDD:281366 73/167 (44%)
did4NP_593871.3 Snf7 22..186 CDD:304451 73/164 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 154 1.000 Domainoid score I1059
eggNOG 1 0.900 - - E1_COG5491
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6382
Inparanoid 1 1.050 173 1.000 Inparanoid score I1171
OMA 1 1.010 - - QHG53529
OrthoFinder 1 1.000 - - FOG0005101
OrthoInspector 1 1.000 - - oto101539
orthoMCL 1 0.900 - - OOG6_102450
Panther 1 1.100 - - LDO PTHR10476
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R316
SonicParanoid 1 1.000 - - X3622
TreeFam 1 0.960 - -
1413.860

Return to query results.
Submit another query.