DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps2 and C01A2.4

DIOPT Version :9

Sequence 1:NP_651455.1 Gene:Vps2 / 43164 FlyBaseID:FBgn0039402 Length:256 Species:Drosophila melanogaster
Sequence 2:NP_001369988.1 Gene:C01A2.4 / 182050 WormBaseID:WBGene00007216 Length:207 Species:Caenorhabditis elegans


Alignment Length:198 Identity:69/198 - (34%)
Similarity:115/198 - (58%) Gaps:0/198 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKMAKEGQMDAVKIMAKDLVRTRRY 72
            |..|.|:.|.|:|.|.|..|||:.:|.:|:::||::..:|||:|.:|..||.:.:||.||:.|..
 Worm     6 KPDPKELERANKRELRKTNRDLESDRRQMDRREKELEQEIKKLAAKGHNDAARHLAKQLVQLRNQ 70

  Fly    73 AKKFMLMKANIQAVSLKIQTLKSQNTMAQAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQSEMMD 137
            ..|.:.|.|.|..|..:...::|...|..||....|.|:.||.|:.|.::...:::|:...|.|.
 Worm    71 KTKSIGMSARISGVQAQNSHMQSMAKMGSAMGTTVKTMKAMNAQMPLEKVAANMREFQMAQEKMG 135

  Fly   138 MKEEMINDAIDDAMEDEGDEEETDAVVSQVLDELGLQLGEQLGDLPSASGSLSIAGGAGAQKAQA 202
            :.|||:||.:|..::..||.:|.||:|:|||||:|:::..:|.::|:....:|....|.....:|
 Worm   136 LTEEMMNDTLDSILDAPGDADEQDAIVNQVLDEIGIEMNSKLANVPALPTKVSSTAPADFDDLEA 200

  Fly   203 VAA 205
            ..|
 Worm   201 QLA 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps2NP_651455.1 Snf7 17..185 CDD:281366 61/167 (37%)
C01A2.4NP_001369988.1 Snf7 16..185 CDD:397437 61/168 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5491
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53529
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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