DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment gro and AT1G71840

DIOPT Version :9

Sequence 1:	NP_996298.1	Gene:	gro / 43162	FlyBaseID:	FBgn0001139	Length:	730	Species:	Drosophila melanogaster
Sequence 2:	NP_177329.2	Gene:	AT1G71840 / 843514	AraportID:	AT1G71840	Length:	407	Species:	Arabidopsis thaliana

Alignment Length:	335	Identity:	71/335 - (21%)
Similarity:	123/335 - (36%)	Gaps:	98/335 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly   443 HGEVVCAVTISNPTKYVYTGG-KGCVKVWDISQ---------PG------NKNPVSQL------D 485
            |.:.|..:..|...:.:.:|| .|.|:::|.|.         ||      ..:|...:      |
plant   112 HKDSVSCLAFSYDGQLLASGGLDGVVQIFDASSGTLKCVLDGPGAGIEWVRWHPRGHIVLAGSED 176

  Fly   486 C------LQRDNYIRSVK----------LLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSAA 534
            |      ..::.|:....          ..|||:.:..|.:.::|.:|   :|.......:....
plant   177 CSLWMWNADKEAYLNMFSGHNLNVTCGDFTPDGKLICTGSDDASLIVW---NPKTCESIHIVKGH 238

  Fly   535 P------ACYALAISPDSKVCFSCCSDGNIAVWDLHNEILVRQFQGHTDGASCIDISPDGSRL-- 591
            |      .|  |.|:.:|.:..|...||::.:.::....:|.....|||...|:..||..:.:
plant   239 PYHTEGLTC--LDINSNSSLAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATIPL 301

  Fly   592 -WTGGLDNTVRSWDLREG--RQLQQHDFSSQIFSLGYCPTGDWLAVGMENSHVEVLHASKPDKYQ 653
             .|||:|..:..|||:..  |.:.:|:  ..:.||.:..|..:||.|..|..|.:
plant   302 AATGGMDKKLIIWDLQHSTPRFICEHE--EGVTSLTWIGTSKYLATGCANGTVSI---------- 354

  Fly   654 LHLHESCVLSLRFAACGKWFVSTGKDNLL-NAWRTPYGASIFQSKETSSVLSCDISTDDKYIVTG 717
                              |      |:|| |...|.:|       ...:|.:..:||:..:||:.
plant   355 ------------------W------DSLLGNCVHTYHG-------HQDAVQAISVSTNTDFIVSV 388

  Fly   718 SGDKKATVYE 727
            |.|..|.|:|
plant   389 SVDNTARVFE 398

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
gro	NP_996298.1	TLE_N	11..124	CDD:397828
		WD40	442..727	CDD:238121	70/333 (21%)
		WD40 repeat	447..486	CDD:293791	11/60 (18%)
		WD40 repeat	494..532	CDD:293791	7/47 (15%)
		WD40 repeat	537..573	CDD:293791	8/35 (23%)
		WD40 repeat	580..615	CDD:293791	11/39 (28%)
		WD40 repeat	620..653	CDD:293791	8/32 (25%)
		WD40 repeat	661..695	CDD:293791	7/34 (21%)
		WD40 repeat	702..726	CDD:293791	8/23 (35%)
AT1G71840	NP_177329.2	WD40	56..406	CDD:225201	71/335 (21%)
		WD40	63..99	CDD:197651
		WD40 repeat	73..110	CDD:293791
		WD40	107..398	CDD:238121	70/333 (21%)
		WD40 repeat	116..153	CDD:293791	8/36 (22%)
		WD40 repeat	159..195	CDD:293791	4/35 (11%)
		WD40 repeat	200..236	CDD:293791	7/38 (18%)
		WD40 repeat	246..281	CDD:293791	8/36 (22%)
		WD40 repeat	287..324	CDD:293791	11/36 (31%)
		WD40 repeat	331..367	CDD:293791	14/69 (20%)
		WD40 repeat	373..397	CDD:293791	8/23 (35%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910