DRSC/TRiP Functional Genomics Resources

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Protein Alignment gro and Plrg1

DIOPT Version :9

Sequence 1:NP_996298.1 Gene:gro / 43162 FlyBaseID:FBgn0001139 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_068525.1 Gene:Plrg1 / 60376 RGDID:621047 Length:514 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
groNP_996298.1 TLE_N 11..124 CDD:397828
WD40 442..727 CDD:238121
WD40 repeat 447..486 CDD:293791
WD40 repeat 494..532 CDD:293791
WD40 repeat 537..573 CDD:293791
WD40 repeat 580..615 CDD:293791
WD40 repeat 620..653 CDD:293791
WD40 repeat 661..695 CDD:293791
WD40 repeat 702..726 CDD:293791
Plrg1NP_068525.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 56..76
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 140..159
WD40 <193..489 CDD:225201
WD40 196..490 CDD:238121
WD 1 202..241
WD40 repeat 209..244 CDD:293791
WD 2 244..283
WD40 repeat 250..286 CDD:293791
WD 3 286..325
WD40 repeat 291..327 CDD:293791
WD 4 328..367
WD40 repeat 334..369 CDD:293791
WD 5 370..410
WD40 repeat 375..410 CDD:293791
WD 6 411..449
WD40 repeat 416..455 CDD:293791
WD 7 460..499
WD40 repeat 465..489 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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