DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gro and gnb2

DIOPT Version :9

Sequence 1:NP_996298.1 Gene:gro / 43162 FlyBaseID:FBgn0001139 Length:730 Species:Drosophila melanogaster
Sequence 2:XP_005165361.1 Gene:gnb2 / 541370 ZFINID:ZDB-GENE-050320-65 Length:344 Species:Danio rerio


Alignment Length:283 Identity:66/283 - (23%)
Similarity:109/283 - (38%) Gaps:49/283 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   465 GCVKVWDISQPGNKNPVSQLDCLQRDNYIRSVKLLPDGRTLIVGGEASNLSIWDLAS--PTPRIK 527
            |.:.:|| |...||.....|    |.:::.:....|.|..:..||..:..||:.|.:  ...|:.
Zfish    77 GKLIIWD-SYTTNKIHAIPL----RSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVS 136

  Fly   528 AELTSAAPACYALAISPDSKVCFSCC------------SDGNIAVWDLHNEILVRQFQGHTDGAS 580
            .||             |......|||            .|...|:||:........|.||:....
Zfish   137 REL-------------PGHTGYLSCCRFIDDNQIITSSGDTTCALWDIETGQQTTLFSGHSGDVM 188

  Fly   581 CIDISPDGSRLWTGGLDNTVRSWDLREGRQLQQ---HDFSSQIFSLGYCPTGDWLAVGMENSHVE 642
            .:.::||.....:|..|.:::.||:|:....|.   |:  |.|.:..:.|:|...|.|.:::...
Zfish   189 SLSLAPDSRTFISGACDASIKLWDIRDSMCRQTFTGHE--SDINAACFFPSGSAFATGSDDATCR 251

  Fly   643 VLHASKPDKYQLHLHES--C-VLSLRFAACGKWFVSTGKDNLLNAWRTPYGASIFQSKETSSV-- 702
            :.......:..|:.|::  | :.|:.|:..|:..::...|...|.|....|..  ..|.|..:  
Zfish   252 LFDLRADQELCLYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGER--AGKHTGVLAG 314

  Fly   703 ----LSCDISTDDKYIV-TGSGD 720
                :||...|||...| |||.|
Zfish   315 HDNRVSCLGVTDDGMAVCTGSWD 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
groNP_996298.1 TLE_N 11..124 CDD:397828
WD40 442..727 CDD:238121 66/283 (23%)
WD40 repeat 447..486 CDD:293791 7/20 (35%)
WD40 repeat 494..532 CDD:293791 10/39 (26%)
WD40 repeat 537..573 CDD:293791 8/47 (17%)
WD40 repeat 580..615 CDD:293791 8/37 (22%)
WD40 repeat 620..653 CDD:293791 5/32 (16%)
WD40 repeat 661..695 CDD:293791 7/33 (21%)
WD40 repeat 702..726 CDD:293791 10/26 (38%)
gnb2XP_005165361.1 WD40 48..344 CDD:238121 66/283 (23%)
WD40 <49..344 CDD:225201 66/283 (23%)
WD40 repeat 58..95 CDD:293791 6/18 (33%)
WD40 repeat 101..141 CDD:293791 10/52 (19%)
WD40 repeat 146..181 CDD:293791 7/34 (21%)
WD40 repeat 188..223 CDD:293791 8/34 (24%)
WD40 repeat 229..265 CDD:293791 6/35 (17%)
WD40 repeat 273..313 CDD:293791 9/41 (22%)
WD40 repeat 319..343 CDD:293791 10/19 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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