DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gro and CG8064

DIOPT Version :9

Sequence 1:NP_996298.1 Gene:gro / 43162 FlyBaseID:FBgn0001139 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_650705.1 Gene:CG8064 / 42196 FlyBaseID:FBgn0038597 Length:922 Species:Drosophila melanogaster


Alignment Length:321 Identity:72/321 - (22%)
Similarity:126/321 - (39%) Gaps:51/321 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   436 RQINTLSHGEVVCAVTISNPTKYVYTGGKGCVKVWDISQPGNKNPVSQLDCLQR--DNYIRSVKL 498
            |.:..|.|...|.:|..||.:..:.:|.....|.||         ...:.||:.  .:||...|.
  Fly   395 RSLTRLGHQSEVRSVCFSNDSLAIGSGAGESFKFWD---------RDAMQCLRTVPTDYILCSKF 450

  Fly   499 LPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSAAPA----CYALAISPDSKVCFSCCSDGNIA 559
            :|..|.:::|.::..|.|.|:|:      |::....||    .:::||.||.|.|.:...|..:.
  Fly   451 VPGDRYVLLGMKSGKLLIVDVAA------ADIVEEIPAHEGELWSIAILPDQKGCVTGSGDTTVK 509

  Fly   560 VWD------------------LHNEILVRQFQGHTDGASCIDISPDGSRLWTGGLDNTVRSWDLR 606
            :|.                  ||...|..:     :...|:.:|||...|..|.||.||:.:.|.
  Fly   510 IWTFELIDAGEGAAQTKVLSLLHKNTLKLE-----ETVLCLAVSPDMKYLAVGLLDATVKVFFLD 569

  Fly   607 EGR---QLQQHDFSSQIFSLGYCPTGDWLAVGMENSHVEVLHASKPDKYQ-LHLHESCVLSLRFA 667
            ..:   .|..|........:.|  ..:.:..|..:.:|:|...:..|.:: :..|:..|:|::|.
  Fly   570 TFKFYLSLYGHKLPVICLDISY--DSNLIVTGSADRNVKVWGLNFGDCHRSIFAHDDSVMSVQFI 632

  Fly   668 ACGKWFVSTGKDNLLNAWRTPYGASIFQSKETSSVLSC-DISTDDKYIVTGSGDKKATVYE 727
            .....|.:.|||..:..|.......|...........| .:|.:.:|:||...|:...::|
  Fly   633 PRTHMFFTCGKDGKVKQWDGDNFEKILTLPGHIGEAYCLSVSPNGRYLVTCGSDRTLRMFE 693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
groNP_996298.1 TLE_N 11..124 CDD:397828
WD40 442..727 CDD:238121 69/313 (22%)
WD40 repeat 447..486 CDD:293791 8/38 (21%)
WD40 repeat 494..532 CDD:293791 9/37 (24%)
WD40 repeat 537..573 CDD:293791 11/53 (21%)
WD40 repeat 580..615 CDD:293791 12/37 (32%)
WD40 repeat 620..653 CDD:293791 5/32 (16%)
WD40 repeat 661..695 CDD:293791 9/33 (27%)
WD40 repeat 702..726 CDD:293791 6/24 (25%)
CG8064NP_650705.1 WD40 <45..288 CDD:225201
WD40 60..511 CDD:295369 33/130 (25%)
WD40 repeat 69..108 CDD:293791
WD40 repeat 113..149 CDD:293791
WD40 repeat 156..194 CDD:293791
WD40 repeat 200..236 CDD:293791
WD40 331..702 CDD:225201 72/321 (22%)
WD40 repeat 349..398 CDD:293791 1/2 (50%)
WD40 401..693 CDD:238121 69/313 (22%)
WD40 repeat 408..441 CDD:293791 9/41 (22%)
WD40 repeat 446..482 CDD:293791 9/41 (22%)
WD40 repeat 487..535 CDD:293791 10/47 (21%)
WD40 repeat 543..578 CDD:293791 11/34 (32%)
WD40 repeat 584..621 CDD:293791 5/38 (13%)
WD40 repeat 626..662 CDD:293791 9/35 (26%)
WD40 repeat 669..692 CDD:293791 6/22 (27%)
Utp12 780..882 CDD:281932
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.