DRSC/TRiP Functional Genomics Resources

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Protein Alignment gro and wdr61

DIOPT Version :9

Sequence 1:NP_996298.1 Gene:gro / 43162 FlyBaseID:FBgn0001139 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_957147.1 Gene:wdr61 / 393827 ZFINID:ZDB-GENE-040426-1851 Length:305 Species:Danio rerio


Alignment Length:226 Identity:58/226 - (25%)
Similarity:99/226 - (43%) Gaps:23/226 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   436 RQINTLSHGEV-VCAVTISNPTKYVYTGGK-GCVKVWDISQPGNKNPVSQLDCLQRDNYIRSVKL 498
            :||.::..|.| ...|..|..:||:.||.. |.|.::.: :.|.|.  ..||  .|..:|.|:..
Zfish    97 KQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGV-ESGKKE--HSLD--TRGKFILSIAY 156

  Fly   499 LPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSAAPACYALAISPDSKVCFSCCSDGNIAVWDL 563
            .|||:.|..|.....::|:|:|  |.::...|...|....:|..||||::..:...||.|.::|:
Zfish   157 SPDGKYLASGAIDGIINIFDIA--TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 219

  Fly   564 HNEILVRQFQGHTDGASCIDISPDGSRLWTGGLDNTVRSWDLREGRQLQQ-HDFSSQIFSLGYCP 627
            .:..|.....||......:..|||.:...:...|.:::.||......:.. .|...|::|:.|.|
Zfish   220 QHANLAGTLSGHGSWVLSVAFSPDDTHFVSSSSDKSIKVWDTSSRSCVNTFFDHQDQVWSVKYNP 284

  Fly   628 TGDWLAVGMENSHVEVLHASKPDKYQLHLHE 658
            ||..:             .|..|...:|:::
Zfish   285 TGSKI-------------VSAGDDRAIHIYD 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
groNP_996298.1 TLE_N 11..124 CDD:397828
WD40 442..727 CDD:238121 56/220 (25%)
WD40 repeat 447..486 CDD:293791 11/39 (28%)
WD40 repeat 494..532 CDD:293791 11/37 (30%)
WD40 repeat 537..573 CDD:293791 10/35 (29%)
WD40 repeat 580..615 CDD:293791 6/35 (17%)
WD40 repeat 620..653 CDD:293791 7/32 (22%)
WD40 repeat 661..695 CDD:293791
WD40 repeat 702..726 CDD:293791
wdr61NP_957147.1 WD40 <14..304 CDD:225201 58/226 (26%)
WD 1 14..57
WD40 15..302 CDD:238121 58/224 (26%)
WD40 repeat 19..62 CDD:293791
WD 2 62..101 2/3 (67%)
WD40 repeat 68..106 CDD:293791 2/8 (25%)
WD 3 104..143 12/41 (29%)
WD40 repeat 110..146 CDD:293791 12/40 (30%)
WD 4 146..187 12/42 (29%)
WD40 repeat 152..188 CDD:293791 11/37 (30%)
WD 5 188..227 11/38 (29%)
WD40 repeat 193..229 CDD:293791 10/35 (29%)
WD 6 230..269 8/38 (21%)
WD40 repeat 236..271 CDD:293791 6/34 (18%)
WD 7 272..305 10/44 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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