DRSC/TRiP Functional Genomics Resources

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Protein Alignment gro and wdr46

DIOPT Version :9

Sequence 1:NP_996298.1 Gene:gro / 43162 FlyBaseID:FBgn0001139 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_956917.1 Gene:wdr46 / 393596 ZFINID:ZDB-GENE-040426-1264 Length:583 Species:Danio rerio


Alignment Length:509 Identity:85/509 - (16%)
Similarity:156/509 - (30%) Gaps:183/509 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   222 IENDSKRRKDEKLQEDEGEKSDQDLVVDVANEMESHSPRPNGEHVSMEVRDRESLNGERLEKPSS 286
            :|..:| :|..|...:|.|.::|    :...|.||...:....|.....::...|:|:....|..
Zfish    12 VERKAK-KKPAKRYWEETENTEQ----NKPTEEESKDEQKQKPHTEKRKKEERLLSGKEDPFPGE 71

  Fly   287 SGIKQE-----------RPPSRSGS------SSSRSTPSLKTKDMEKPGTPGAKARTPTPNAAAP 334
            ..|.|:           :.|:|:|.      :||.|...|..|...:.|.               
Zfish    72 KPIPQKQLRTFQRGQKHKVPARAGPKLKHAITSSESLSELAQKQAARYGL--------------- 121

  Fly   335 APGVNPKQMMPQGPPPAGYPGAPYQRPADPYQRPPSDPAYGRPPPMPYDPHAHVRTNGIPHPSAL 399
                    ::|:   .||:              ...|..         :....:..:.|.....:
Zfish   122 --------LLPE---DAGF--------------LEGDDG---------EDTCTIAQDDIADAVDI 152

  Fly   400 TGGKPAYSFHMNGEGSLQPVPFPPD-------ALVGVGIPRHAR-----------QINTLS---- 442
            |.|...::.|::..|     |:..|       .|:| |...|..           ::|.:.    
Zfish   153 TSGAKYFNLHLSQFG-----PYRLDYSRTGRHLLLG-GRRGHVACFDWQTKHLMCEMNVMETVND 211

  Fly   443 ----HGEVVCAVTISNPTKYVYTGGKGCVKVWDISQPGNKNPVSQLDCLQRDNYIRSVKLLP--- 500
                |.|.:.||. .....|:| ..||.                :..|:::.|.:..::.||   
Zfish   212 IKWLHTEAMFAVA-QKKWLYIY-DSKGV----------------EFHCIKKFNDVLRMQFLPYHF 258

  Fly   501 ----------------------------DGRTLI-----------VGGEASNLSIWDLASPTPRI 526
                                        .||..:           :|..:..:|:|......|.:
Zfish   259 LLATASATGFLQYLDVSIGKEIAAICTKSGRLNVMTQNPYNAIIHLGHTSGTVSLWSPNQKEPLV 323

  Fly   527 KAELTSAAPACYALAISPDSKVCFSCCSDGNIAVWDLHNEILVRQFQG-HTD----GASCIDISP 586
            |  :.....|.:::|:........:...|..:.|:|      :|.|:. |:.    ||||:.:|.
Zfish   324 K--MLCHRGAVHSVAVDKTGTYMVTSGLDRKLKVYD------IRAFKPFHSSFLPAGASCLSLSQ 380

  Fly   587 DGSRLWTGGLDNTVRSWDLREG-----RQLQQHDFSSQIFSLGYCPTGDWLAVG 635
            .|  |.:....:.|:.:....|     :....|....|:..:.|||..|.|.:|
Zfish   381 RG--LLSAATGDVVQVYQNVWGSTPVSKPYMAHRLRGQVCGVAYCPFEDVLGIG 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
groNP_996298.1 TLE_N 11..124 CDD:397828
WD40 442..727 CDD:238121 44/254 (17%)
WD40 repeat 447..486 CDD:293791 6/38 (16%)
WD40 repeat 494..532 CDD:293791 9/79 (11%)
WD40 repeat 537..573 CDD:293791 5/35 (14%)
WD40 repeat 580..615 CDD:293791 7/39 (18%)
WD40 repeat 620..653 CDD:293791 6/16 (38%)
WD40 repeat 661..695 CDD:293791
WD40 repeat 702..726 CDD:293791
wdr46NP_956917.1 WD40 169..390 CDD:295369 40/249 (16%)
WD40 repeat 169..202 CDD:293791 5/33 (15%)
WD40 <172..370 CDD:225201 33/224 (15%)
WD40 repeat 210..245 CDD:293791 9/52 (17%)
WD40 repeat 248..284 CDD:293791 2/35 (6%)
WD40 repeat 291..326 CDD:293791 5/36 (14%)
WD40 repeat 332..365 CDD:293791 6/38 (16%)
WD40 repeat 373..414 CDD:293791 9/42 (21%)
BING4CT 407..484 CDD:285375 8/26 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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