DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gro and dcaf13

DIOPT Version :9

Sequence 1:NP_996298.1 Gene:gro / 43162 FlyBaseID:FBgn0001139 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_956423.1 Gene:dcaf13 / 393097 ZFINID:ZDB-GENE-040426-703 Length:445 Species:Danio rerio


Alignment Length:390 Identity:71/390 - (18%)
Similarity:133/390 - (34%) Gaps:102/390 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   379 PMPYDPHAH-----------------VRTNGIPHPSALTGGKPAYSFHMNGEGSLQPVPFPPDAL 426
            |..|||..|                 .|....|..::|.|.:...|.                  
Zfish    25 PRNYDPTLHPFEVPREYTRALNATKLERVFAKPFVASLDGHRDVISC------------------ 71

  Fly   427 VGVGIPRHARQINTLSHGEVVCAVTISNPTKYVYTGGKGCVKVWDISQPGNKNPVSQLDCLQ--- 488
                |.:||:.::|:..|  .|               .|.||||::         .:.:|.:   
Zfish    72 ----ITKHAKSLSTVISG--AC---------------DGEVKVWNL---------PKRECTRTVQ 106

  Fly   489 -RDNYIRSVKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAE--LTSAAPACYALAISPDSKVCF 550
             .:.::|.:.....|.:....|:...:..|::.:|...::.|  .|....|.:........:..|
Zfish   107 AHEGFVRGICSRFCGTSFFTVGDDKTIKQWNMEAPGYGVREEPINTILGKAVFTGIDHHQREGTF 171

  Fly   551 SCCSDGNIAVWDLHNEILVRQFQGHTDGASCIDISP-DGSRLWTGGLDNTVRSWDLREGRQLQQ- 613
            ..|.. .:.:||......|..|....|..|.:..:| :...|.:...|.::..:|.||...|:: 
Zfish   172 VTCGQ-TVDIWDEQRSSPVLSFSWGVDSFSSVRYNPVEPDLLASCASDRSIVLYDTRESAPLRKV 235

  Fly   614 -----------HDFSSQIFSLGYCPTGDW--LAVGMENSHVEVLHASKPDKYQLHL-HESCVLSL 664
                       :...:..|:   |...|:  ....:.|..|.|         .:|: |.|.||.:
Zfish   236 IMQLRSNTLCWNPMEAYYFT---CANEDYNLYTYDIRNLDVPV---------TVHMDHVSAVLDV 288

  Fly   665 RFAACGKWFVSTGKDNLLNAWRTPYGAS--IFQSKETSSVLSCDISTDDKYIVTGSGDKKATVYE 727
            .::..|:.|||...|..:..:....|.|  ::.:|....|:....|.|.|:|::||.:....:::
Zfish   289 DYSPTGREFVSASFDKTIRIFPKDKGHSREVYHTKRMQHVICVKWSADSKFIMSGSDEMNIRLWK 353

  Fly   728  727
            Zfish   354  353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
groNP_996298.1 TLE_N 11..124 CDD:397828
WD40 442..727 CDD:238121 57/308 (19%)
WD40 repeat 447..486 CDD:293791 6/38 (16%)
WD40 repeat 494..532 CDD:293791 6/39 (15%)
WD40 repeat 537..573 CDD:293791 5/35 (14%)
WD40 repeat 580..615 CDD:293791 8/47 (17%)
WD40 repeat 620..653 CDD:293791 6/34 (18%)
WD40 repeat 661..695 CDD:293791 9/35 (26%)
WD40 repeat 702..726 CDD:293791 7/23 (30%)
dcaf13NP_956423.1 WD40 <49..349 CDD:225201 66/360 (18%)
WD40 59..353 CDD:238121 64/354 (18%)
WD 1 64..104 14/87 (16%)
WD 2 107..146 5/38 (13%)
WD40 repeat 113..155 CDD:293791 7/41 (17%)
WD 3 154..191 6/37 (16%)
WD40 repeat 190..236 CDD:293791 10/45 (22%)
WD 4 194..234 9/39 (23%)
WD 5 236..276 6/51 (12%)
WD40 repeat 242..279 CDD:293791 6/48 (13%)
WD 6 280..319 11/38 (29%)
WD40 repeat 285..322 CDD:293791 9/36 (25%)
WD 7 323..362 8/31 (26%)
WD40 repeat 328..352 CDD:293791 7/23 (30%)
Sof1 354..438 CDD:282068 71/390 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 411..434
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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