DRSC/TRiP Functional Genomics Resources

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Protein Alignment gro and kat80

DIOPT Version :9

Sequence 1:NP_996298.1 Gene:gro / 43162 FlyBaseID:FBgn0001139 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_523363.2 Gene:kat80 / 32581 FlyBaseID:FBgn0040207 Length:819 Species:Drosophila melanogaster


Alignment Length:336 Identity:68/336 - (20%)
Similarity:134/336 - (39%) Gaps:62/336 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   429 VGIPRH--ARQINTLSHGEVVCAVTISNPTKYVYTGGKG-CVKVWDISQ-------PGNKNPVSQ 483
            :.:||.  ::..:..:|...|.::.:....:.:.|||:. .|.:|.|.|       .|:..   .
  Fly     1 MALPRKLISKIYDIKAHDSRVTSLDLGETGRVLVTGGEDRNVNLWAIGQNECFMSLTGHNR---S 62

  Fly   484 LDCLQ---RDNYIRSVKLLPDGRTLIVGGEASNLSI---WDLASPTPRIKAELTSAAPACYALAI 542
            :||::   :||::.|               |.::.|   |||.|  .:|.:.|.....:...|..
  Fly    63 IDCVRFAYKDNFVYS---------------ADDIGIIRRWDLNS--QKIYSTLNGHMKSVRTLDF 110

  Fly   543 SPDSKVCFSCCSDGNIAVWDLHNE-ILVRQFQGHTDGASCIDISPDGSRLWTGGLDNTVRSWDLR 606
            :|..:...|..:|..:.:||:.|| ..::..:||....:.:..||||..:.:.||:.::..||:|
  Fly   111 NPSGEYVVSGSNDTTVRLWDVQNENNCIKVCRGHMSHVNSVKFSPDGLWIASAGLEGSILIWDIR 175

  Fly   607 EGRQLQQHDFS---SQIFSLGYCPTGDWLAVGMENSHVEV--LHASKPDKYQLHLHESCVLSLRF 666
            :.:|:.:....   :.|..:.:.|....||.|..:..|.:  |...:......|.:...:..:.|
  Fly   176 KSKQIMEFIADPPVTAITCVQFHPFEFLLAAGRVDGTVSIYDLEHQQLVSQTTHFYGQAIRCITF 240

  Fly   667 AACGK--------------WFVSTGKDNLLNAWRTPYGASIFQSKETSSVLSCDI-STDDKYIVT 716
            :..|:              |......|::.:.|     :|:...|..::.|.|.. ..|...|.|
  Fly   241 SDNGECLFVGSSSGISVIGWEPDRELDHIKSTW-----SSLADMKVVNNKLICGCHEIDTVSINT 300

  Fly   717 GSGDKKATVYE 727
            .|.|:....|:
  Fly   301 ISLDRVIPFYQ 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
groNP_996298.1 TLE_N 11..124 CDD:397828
WD40 442..727 CDD:238121 65/319 (20%)
WD40 repeat 447..486 CDD:293791 9/46 (20%)
WD40 repeat 494..532 CDD:293791 9/40 (23%)
WD40 repeat 537..573 CDD:293791 8/36 (22%)
WD40 repeat 580..615 CDD:293791 10/34 (29%)
WD40 repeat 620..653 CDD:293791 7/34 (21%)
WD40 repeat 661..695 CDD:293791 6/47 (13%)
WD40 repeat 702..726 CDD:293791 7/24 (29%)
kat80NP_523363.2 Katanin_con80 667..803 CDD:290636
WD40 <4..330 CDD:225201 68/333 (20%)
WD40 14..260 CDD:238121 53/265 (20%)
WD40 repeat 22..58 CDD:293791 7/35 (20%)
WD40 repeat 63..99 CDD:293791 12/52 (23%)
WD40 repeat 106..142 CDD:293791 8/35 (23%)
WD40 repeat 148..184 CDD:293791 10/35 (29%)
WD40 repeat 192..228 CDD:293791 7/35 (20%)
WD40 repeat 285..310 CDD:293791 7/24 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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