DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gro and eya-1

DIOPT Version :9

Sequence 1:NP_996298.1 Gene:gro / 43162 FlyBaseID:FBgn0001139 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_001021055.1 Gene:eya-1 / 173293 WormBaseID:WBGene00001377 Length:503 Species:Caenorhabditis elegans


Alignment Length:184 Identity:40/184 - (21%)
Similarity:62/184 - (33%) Gaps:51/184 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   340 PKQMMPQGPPPAGYPGAPYQR---------PADPYQRPPSDPAYGRPPPMPYDPHAHVRTNGIPH 395
            |:..|.....||.|    ||:         .|.||..  :.|:|....|:.|...|....|  |:
 Worm    93 PQYAMYTSANPANY----YQQVTANLRAGTTAFPYSL--TTPSYYGSYPVDYTSAAAAYQN--PY 149

  Fly   396 PSALTGGKPAYSFHMNGEGSLQPVPFPPDALVGVGIPRHARQINTLSHGEVVCAVTISN------ 454
            .:.|.||..|..::.....:.........:::|.    .|..:.|.|.|......|:::      
 Worm   150 YTNLRGGTAAPYYNPLNATTAAAYASVASSVLGT----DAVNLGTSSDGSTGVPSTVTSFSLKEK 210

  Fly   455 ---PTKYVYTGGKGC---------VKVWDISQPGNKNPVSQLDCLQRDNYIRSV 496
               .:|...||  .|         |.:|||         ..:..:.| ||:.||
 Worm   211 KPKVSKKKKTG--SCSPGDETYARVFIWDI---------DDIAVISR-NYLASV 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
groNP_996298.1 TLE_N 11..124 CDD:397828
WD40 442..727 CDD:238121 16/73 (22%)
WD40 repeat 447..486 CDD:293791 9/56 (16%)
WD40 repeat 494..532 CDD:293791 2/3 (67%)
WD40 repeat 537..573 CDD:293791
WD40 repeat 580..615 CDD:293791
WD40 repeat 620..653 CDD:293791
WD40 repeat 661..695 CDD:293791
WD40 repeat 702..726 CDD:293791
eya-1NP_001021055.1 HAD_Eya 230..503 CDD:319789 9/33 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S1980
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

Return to query results.
Submit another query.