DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gro and CFAP52

DIOPT Version :9

Sequence 1:NP_996298.1 Gene:gro / 43162 FlyBaseID:FBgn0001139 Length:730 Species:Drosophila melanogaster
Sequence 2:NP_659491.4 Gene:CFAP52 / 146845 HGNCID:16053 Length:620 Species:Homo sapiens


Alignment Length:265 Identity:59/265 - (22%)
Similarity:98/265 - (36%) Gaps:71/265 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   438 INTLSHGEVVCAVTISNPTKYVYTGGKGCVKVWDIS------QPGNKNPVSQLDCLQ-RDNYIRS 495
            ||......|....|.|:..:.:..||:|.|:||.|.      :...|...|.:.|:: :.|....
Human   412 INNAHRIGVTAIATTSDCKRVISGGGEGEVRVWQIGCQTQKLEEALKEHKSSVSCIRVKRNNEEC 476

  Fly   496 VKLLPDGRTLIVGGEASNLSIWDLASPTPRIKAELTSAAP-----ACYALAISPDSKVCFSCCSD 555
            |....||..:          ||||.    |::......|.     .||    .|:.....:..:|
Human   477 VTASTDGTCI----------IWDLV----RLRRNQMILANTLFQCVCY----HPEEFQIITSGTD 523

  Fly   556 GNIAVWDLHNEILVRQFQGHTDGA-SCIDISPDGSRLWTGGLDNTVRSWDLREGRQLQQHDFSSQ 619
            ..||.|::.:..::|:.:|...|: :.:||:.:|....|||.|:.|:.||..||           
Human   524 RKIAYWEVFDGTVIRELEGSLSGSINGMDITQEGVHFVTGGNDHLVKVWDYNEG----------- 577

  Fly   620 IFSLGYCPTGDWLAVGMENSHVEVLHASKPDKYQLHLHESCVLSLRFAACGKWFVSTGKDNLLNA 684
                             |.:||.|.|:..            :..:|.:...::.||...|..:..
Human   578 -----------------EVTHVGVGHSGN------------ITRIRISPGNQYIVSVSADGAILR 613

  Fly   685 WRTPY 689
            |:.||
Human   614 WKYPY 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
groNP_996298.1 TLE_N 11..124 CDD:397828
WD40 442..727 CDD:238121 57/261 (22%)
WD40 repeat 447..486 CDD:293791 11/44 (25%)
WD40 repeat 494..532 CDD:293791 8/37 (22%)
WD40 repeat 537..573 CDD:293791 8/35 (23%)
WD40 repeat 580..615 CDD:293791 12/34 (35%)
WD40 repeat 620..653 CDD:293791 5/32 (16%)
WD40 repeat 661..695 CDD:293791 7/29 (24%)
WD40 repeat 702..726 CDD:293791
CFAP52NP_659491.4 WD40 1..405 CDD:225201
WD 1. /evidence=ECO:0000255 62..106
WD40 repeat 68..109 CDD:293791
WD40 100..141 CDD:197651
WD 2. /evidence=ECO:0000255 109..150
WD40 repeat 114..159 CDD:293791
WD 3. /evidence=ECO:0000255 156..195
WD40 repeat 166..201 CDD:293791
WD40 repeat 208..245 CDD:293791
WD40 repeat 253..307 CDD:293791
WD40 277..617 CDD:225201 57/262 (22%)
WD 4. /evidence=ECO:0000255 288..327
WD 5. /evidence=ECO:0000255 330..369
WD40 346..615 CDD:295369 56/260 (22%)
WD 6. /evidence=ECO:0000255 372..411
WD40 repeat 380..414 CDD:293791 1/1 (100%)
WD 7. /evidence=ECO:0000255 415..454 10/38 (26%)
WD40 repeat 420..459 CDD:293791 10/38 (26%)
WD 8. /evidence=ECO:0000255 459..498 11/52 (21%)
WD40 repeat 465..500 CDD:293791 10/48 (21%)
WD 9. /evidence=ECO:0000255 500..539 8/42 (19%)
WD40 repeat 505..541 CDD:293791 8/39 (21%)
WD 10. /evidence=ECO:0000255 543..582 14/66 (21%)
WD40 repeat 549..584 CDD:293791 15/62 (24%)
WD 11. /evidence=ECO:0000255 585..620 8/46 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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