DRSC/TRiP Functional Genomics Resources

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Protein Alignment E(spl)m3-HLH and lin-22

DIOPT Version :9

Sequence 1:NP_524509.2 Gene:E(spl)m3-HLH / 43156 FlyBaseID:FBgn0002609 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_500281.1 Gene:lin-22 / 177082 WormBaseID:WBGene00003008 Length:173 Species:Caenorhabditis elegans


Alignment Length:141 Identity:41/141 - (29%)
Similarity:67/141 - (47%) Gaps:31/141 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 KPLLERKRRARINKCLDDLKDLMVECLQQEGEHVTRLEKADILELTVDHMRKLKQRGGLSLQGVV 80
            |||:|:||||||||.|..||.::::...:.....::.|||||||:.|:::::|:.....||....
 Worm    26 KPLMEKKRRARINKSLSQLKQILIQDEHKNSIQHSKWEKADILEMAVEYLQQLRSAQPCSLSPST 90

  Fly    81 AGVGSPPTSTSTAH--------VESF----RSGYVHAADQITQVLLQTQ---------------- 117
            :.:.:|||......        :.||    ...|| |..|:.|:.:.||                
 Worm    91 SSISTPPTPKEEIRNIKVPLNPIASFLNPMMQQYV-AYQQLAQLSMYTQLFNNPAGVPLRADAGV 154

  Fly   118 --QTDEIGRKI 126
              |:.|:..|:
 Worm   155 TAQSPELAEKL 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(spl)m3-HLHNP_524509.2 HLH 11..70 CDD:238036 24/53 (45%)
ORANGE 96..136 CDD:128787 12/53 (23%)
lin-22NP_500281.1 bHLH_O_HES 29..82 CDD:381416 21/52 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 65 1.000 Domainoid score I6616
eggNOG 1 0.900 - - E1_KOG4304
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000785
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1011
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.770

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