DRSC/TRiP Functional Genomics Resources

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Protein Alignment E(spl)m3-HLH and vim.2

DIOPT Version :10

Sequence 1:NP_524509.2 Gene:E(spl)m3-HLH / 43156 FlyBaseID:FBgn0002609 Length:224 Species:Drosophila melanogaster
Sequence 2:XP_002941006.1 Gene:vim.2 / 100495820 XenbaseID:XB-GENE-920288 Length:374 Species:Xenopus tropicalis


Alignment Length:173 Identity:34/173 - (19%)
Similarity:68/173 - (39%) Gaps:38/173 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 EMSKTY-QYRKVMKPLLERKRRARIN-------------KCLDDLKDLMVECLQQEGEHVTRLEK 54
            |..|.: :.:::::.|.:.|..|.|.             ||.::|      .|:.|.|...|..:
 Frog   106 EYDKEFKELKELIEKLTKEKGMAEIERGNLEEEIDIWNAKCDEEL------ILKAEAEQTLREFR 164

  Fly    55 ADILELTVDHM---RKLKQ-------RGGLSLQGVVAGVGSPPTSTSTAHVESFRSGYVHAADQI 109
            .|:.:.|:..:   ||::|       ...|..:.|...:.....|..:|.::|.|.....|...|
 Frog   165 QDVDDATIQKLELERKVEQLIDEIEFLKKLHDEEVADLLRQIEESKVSAELDSSRPDLAAAVKAI 229

  Fly   110 TQVLLQTQQTDEIGRKIM---KFLSTRLIELQTQLLQQQQQQQ 149
                 :.|...|:.:.|.   |:..|:|..|:.|:.:.:.:.:
 Frog   230 -----RAQIEQEVTKNIQDAEKWYKTKLGSLKGQVSKNEDKMK 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(spl)m3-HLHNP_524509.2 bHLH-O_ESMB_like 5..71 CDD:381584 17/89 (19%)
ORANGE 96..136 CDD:128787 10/42 (24%)
vim.2XP_002941006.1 Filament 56..367 CDD:459643 34/173 (20%)

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