DRSC/TRiP Functional Genomics Resources

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Protein Alignment E(spl)m3-HLH and her4.1

DIOPT Version :9

Sequence 1:NP_524509.2 Gene:E(spl)m3-HLH / 43156 FlyBaseID:FBgn0002609 Length:224 Species:Drosophila melanogaster
Sequence 2:NP_001096598.1 Gene:her4.1 / 100149863 ZFINID:ZDB-GENE-980526-521 Length:152 Species:Danio rerio


Alignment Length:222 Identity:59/222 - (26%)
Similarity:86/222 - (38%) Gaps:86/222 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KTYQYRKVMKPLLERKRRARINKCLDDLKDLMV-ECLQQEGEHVTRLEKADILELTVDHMRKLKQ 70
            :|....|:.||::|:.||.|||..::.||.|:. |.::|:.:  :|.|||||||:|:|.:|:   
Zfish    13 ETLLTNKLRKPMVEKIRRERINSSIEKLKTLLAQEFIKQQPD--SRQEKADILEMTLDFLRR--- 72

  Fly    71 RGGLSLQGVVAGVGSPPTSTSTAHVESFRSGYV-HAADQITQVLLQTQQTDEIGRKIMKFLSTRL 134
                |.:...||.|              ||..| .|...::|..:|||.            .|||
Zfish    73 ----SQKSSAAGDG--------------RSRCVQEAVSFLSQCPVQTQS------------HTRL 107

  Fly   135 IELQTQLLQQQQQQQQHQQQQIPQSSGRLAFPLLGGYGPAAAAAAISYSSFLTSKDELIDVTSVD 199
            ::|   .|..|....||                                            |.||
Zfish   108 MKL---FLHMQTPADQH--------------------------------------------TRVD 125

  Fly   200 GNALSETASVSS--QESGASEPVWRPW 224
            ....:||.:.||  |.:.|...:||||
Zfish   126 NPQTTETHANSSAKQHTPARSHIWRPW 152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(spl)m3-HLHNP_524509.2 HLH 11..70 CDD:238036 25/59 (42%)
ORANGE 96..136 CDD:128787 11/40 (28%)
her4.1NP_001096598.1 HLH 19..75 CDD:238036 26/64 (41%)
ORANGE 77..123 CDD:128787 19/118 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573744
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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