DRSC/TRiP Functional Genomics Resources

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Protein Alignment E(spl)m3-HLH and her4.2

DIOPT Version :10

Sequence 1:NP_524509.2 Gene:E(spl)m3-HLH / 43156 FlyBaseID:FBgn0002609 Length:224 Species:Drosophila melanogaster
Sequence 2:XP_073794021.1 Gene:her4.2 / 100148329 ZFINID:ZDB-GENE-060815-1 Length:209 Species:Danio rerio


Alignment Length:222 Identity:59/222 - (26%)
Similarity:86/222 - (38%) Gaps:86/222 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KTYQYRKVMKPLLERKRRARINKCLDDLKDLMV-ECLQQEGEHVTRLEKADILELTVDHMRKLKQ 70
            :|....|:.||::|:.||.|||..::.||.|:. |.::|:.:  :|.|||||||:|:|.:|:   
Zfish    70 ETLLTNKLRKPMVEKIRRERINSSIEKLKTLLAQEFIKQQPD--SRQEKADILEMTLDFLRR--- 129

  Fly    71 RGGLSLQGVVAGVGSPPTSTSTAHVESFRSGYV-HAADQITQVLLQTQQTDEIGRKIMKFLSTRL 134
                |.:...||.|              ||..| .|...::|..:|||.            .|||
Zfish   130 ----SQKSSAAGDG--------------RSRCVQEAVSFLSQCPVQTQS------------HTRL 164

  Fly   135 IELQTQLLQQQQQQQQHQQQQIPQSSGRLAFPLLGGYGPAAAAAAISYSSFLTSKDELIDVTSVD 199
            ::|   .|..|....||                                            |.||
Zfish   165 MKL---FLHMQTPADQH--------------------------------------------TRVD 182

  Fly   200 GNALSETASVSS--QESGASEPVWRPW 224
            ....:||.:.||  |.:.|...:||||
Zfish   183 NPQTTETHANSSAKQHTPARSHIWRPW 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(spl)m3-HLHNP_524509.2 bHLH-O_ESMB_like 5..71 CDD:381584 26/64 (41%)
ORANGE 96..136 CDD:128787 11/40 (28%)
her4.2XP_073794021.1 None

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