DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment E(spl)mbeta-HLH and Helt

DIOPT Version :10

Sequence 1:NP_524505.2 Gene:E(spl)mbeta-HLH / 43152 FlyBaseID:FBgn0002733 Length:195 Species:Drosophila melanogaster
Sequence 2:XP_008769494.1 Gene:Helt / 498633 RGDID:1564073 Length:241 Species:Rattus norvegicus


Alignment Length:234 Identity:55/234 - (23%)
Similarity:83/234 - (35%) Gaps:80/234 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 MSKTYQYRK---VMKPMLERKRRARINKCLDELKDIMVECLTQEGEHITRLEKADILELTVEHMK 68
            ||...:.||   |...::|::||.|||:||:||...:...|.::..  .:||||:|||:||::::
  Rat     1 MSDRLKERKRTPVSHKVIEKRRRDRINRCLNELGKTVPMALAKQSS--GKLEKAEILEMTVQYLR 63

  Fly    69 KLRAQKQLRLSSVTGGVSPSADPKLSIAESFRAGYVHAANEVSKTLAAVPGVSVDLGTQLMSHLG 133
            .|.:..           .|....|..:...| |.|.|....                 :.|.:|.
  Rat    64 ALHSAD-----------FPRGREKAELLAEF-ANYFHYGYH-----------------ECMKNLV 99

  Fly   134 HRL-----------NYLQVVV-----------PSLPIGVPLQAPVEDQAMVTPP---------PS 167
            |.|           .|.:::.           |:.|   ||..|..|.:....|         |.
  Rat   100 HYLTTVERMETKDTKYARILAFLQSKARLGAEPAFP---PLSLPEPDFSYQLHPAGPEFPGHSPG 161

  Fly   168 ECDSLESGAC------------SPAPSEASSTSGPMWRP 194
            |......||.            |||....||.:.|:..|
  Rat   162 EATVFPQGATPGSFPWPPGAARSPALPYLSSATVPLPTP 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(spl)mbeta-HLHNP_524505.2 bHLH-O_ESMB_like 7..75 CDD:381584 26/70 (37%)
ORANGE 97..141 CDD:128787 9/54 (17%)
HeltXP_008769494.1 bHLH-O_HELT 14..69 CDD:381414 21/56 (38%)
Hairy_orange 86..127 CDD:462193 7/57 (12%)
DUF1373 129..>213 CDD:462093 18/75 (24%)

Return to query results.
Submit another query.